cassava17995.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava17995.valid.m1 T49146_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava17995.valid.m1 RRM 98 168
cassava17995.valid.m1 RRM 197 267

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30078.m002323 Ricinus communis 30078.m002323 N 0.930
cassava23556.valid.m1 Manihot esculenta cassava23556.valid.m1 N 0.901
cassava23555.valid.m1 Manihot esculenta cassava23555.valid.m1 N 0.901
cassava23554.valid.m1 Manihot esculenta cassava23554.valid.m1 N 0.845
B9MTC6_POPTR Populus trichocarpa POPTR_0006s12910 N 0.838
B9IFN7_POPTR Populus trichocarpa POPTR_0016s09190 N 0.838
AT2G37220 Arabidopsis thaliana AT2G37220-TAIR-G N 0.796
XM_002877875.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001832 N 0.796
XM_002881451.1 Arabidopsis lyrata fgenesh2_kg.4__1774__AT2G37220.1 N 0.796
CP29 Arabidopsis thaliana AT3G53460-TAIR-G N 0.796
mgf013487m Mimulus guttatus mgf013487m N 0.789
SB01G034120 Sorghum bicolor Sb01g034120 N 0.789
BRADI1G20440 Brachypodium distachyon BRADI1G20440 N 0.782
GRMZM2G042683 Zea mays GRMZM2G042683 N 0.782
ppa009295m Prunus persica ppa009295m N 0.782
LOC_Os07g43810 Oryza sativa LOC_Os07g43810 N 0.775
BGIOSIBCE011310 Oryza indica BGIOSIBCE011310 N 0.775
LOC_Os03g25960 Oryza sativa LOC_Os03g25960 N 0.775
BGIOSIBCE025708 Oryza indica BGIOSIBCE025708 N 0.775
Glyma10g06620.1 Glycine max Glyma10g06620.1 N 0.768
GRMZM2G068715 Zea mays GRMZM2G068715 N 0.761
Cucsa.306870 Cucumis sativus Cucsa.306870 N 0.761
GRMZM2G158835 Zea mays GRMZM2G158835 N 0.761
Glyma13g20830.1 Glycine max Glyma13g20830.1 N 0.755
BRADI1G61250 Brachypodium distachyon BRADI1G61250 N 0.754
SB02G040260 Sorghum bicolor Sb02g040260 N 0.754
Medtr1g076830 Medicago truncatula Medtr1g076830 N 0.746