Cucsa.306870 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.306870 T49626_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.306870.1 RRM 95 165
Cucsa.306870.1 RRM 195 265
Cucsa.306870.2 RRM 95 160

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma10g06620.1 Glycine max Glyma10g06620.1 N 0.817
cassava23555.valid.m1 Manihot esculenta cassava23555.valid.m1 N 0.810
cassava23556.valid.m1 Manihot esculenta cassava23556.valid.m1 N 0.810
ppa009295m Prunus persica ppa009295m N 0.803
Glyma13g20830.1 Glycine max Glyma13g20830.1 N 0.797
AT2G37220 Arabidopsis thaliana AT2G37220-TAIR-G N 0.789
XM_002881451.1 Arabidopsis lyrata fgenesh2_kg.4__1774__AT2G37220.1 N 0.782
B9IFN7_POPTR Populus trichocarpa POPTR_0016s09190 N 0.782
PK03351.1 Cannabis sativa PK03351.1 N 0.775
B9MTC6_POPTR Populus trichocarpa POPTR_0006s12910 N 0.768
SB01G034120 Sorghum bicolor Sb01g034120 N 0.768
cassava23554.valid.m1 Manihot esculenta cassava23554.valid.m1 N 0.768
30078.m002323 Ricinus communis 30078.m002323 N 0.768
BRADI1G20440 Brachypodium distachyon BRADI1G20440 N 0.768
cassava17995.valid.m1 Manihot esculenta cassava17995.valid.m1 N 0.761
GRMZM2G068715 Zea mays GRMZM2G068715 N 0.761
Medtr1g076830 Medicago truncatula Medtr1g076830 N 0.761
mgf013487m Mimulus guttatus mgf013487m N 0.761
GRMZM2G158835 Zea mays GRMZM2G158835 N 0.761
GRMZM2G042683 Zea mays GRMZM2G042683 N 0.754
CP29 Arabidopsis thaliana AT3G53460-TAIR-G N 0.754
BGIOSIBCE025708 Oryza indica BGIOSIBCE025708 N 0.754
XM_002877875.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001832 N 0.754
LOC_Os03g25960 Oryza sativa LOC_Os03g25960 N 0.754
LOC_Os07g43810 Oryza sativa LOC_Os07g43810 N 0.754
BGIOSIBCE011310 Oryza indica BGIOSIBCE011310 N 0.754
SB02G040260 Sorghum bicolor Sb02g040260 N 0.739
BRADI1G61250 Brachypodium distachyon BRADI1G61250 N 0.725