B9IDH4_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0015s00690 T45661_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s00690.1 RRM 9 76
POPTR_0015s00690.1 RRM 115 178

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa017674m Prunus persica ppa017674m N 0.894
mgf011321m Mimulus guttatus mgf011321m N 0.932
mgf000052m Mimulus guttatus mgf000052m N 0.932
gw1.41.236.1 Selaginella moellendorfii gw1.41.236.1 N 0.767
Glyma20g38060.1 Glycine max Glyma20g38060.1 N 0.748
Glyma19g39850.1 Glycine max Glyma19g39850.1 N 0.741
Glyma06g14060.1 Glycine max Glyma06g14060.1 N 0.932
Glyma04g40740.1 Glycine max Glyma04g40740.1 N 0.932
Glyma03g37240.1 Glycine max Glyma03g37240.1 N 0.741
estExt_Genewise1.C_280136 Physcomitrella patens estExt_Genewise1.C_280136 N 0.799
e_gw1.7.233.1 Physcomitrella patens e_gw1.7.233.1 N 0.806
e_gw1.19.485.1 Selaginella moellendorfii e_gw1.19.485.1 N 0.774
e_gw1.173.63.1 Physcomitrella patens e_gw1.173.63.1 N 0.805
Cucsa.205570 Cucumis sativus Cucsa.205570 N 0.748
Cucsa.181840 Cucumis sativus Cucsa.181840 N 0.770
cassava4050.m1 Manihot esculenta cassava4050.m1 N 0.763
cassava4049.m1 Manihot esculenta cassava4049.m1 N 0.763
cassava4048.m1 Manihot esculenta cassava4048.m1 N 0.763
mgf014175m Mimulus guttatus mgf014175m N 0.932
GRMZM2G170365 Zea mays GRMZM2G170365 N 0.748
ppa009968m Prunus persica ppa009968m N 0.726
ppa009360m Prunus persica ppa009360m N 0.726
ppa009045m Prunus persica ppa009045m N 0.741
ppa009033m Prunus persica ppa009033m N 0.741
MDP0000857322 Malus x domestica MDP0000857322 N 0.871
MDP0000271362 Malus x domestica MDP0000271362 N 0.733
MDP0000268577 Malus x domestica MDP0000268577 N 0.879
MDP0000231034 Malus x domestica MDP0000231034 N 0.726
MDP0000200391 Malus x domestica MDP0000200391 N 0.879
LjT41H24.70.nd Lotus japonicus LjT41H24.70.nd N 0.727
chr5.CM0299.260.nc Lotus japonicus chr5.CM0299.260.nc N 0.719
chr2.CM0249.1120.nc Lotus japonicus chr2.CM0249.1120.nc N 0.924
Medtr8g068270 Medicago truncatula Medtr8g068270 N 0.741
Medtr3g122850 Medicago truncatula Medtr3g122850 N 0.932
Medtr1g099910 Medicago truncatula Medtr1g099910 N 0.704
GRMZM2G436092 Zea mays GRMZM2G436092 N 0.776
GRMZM2G331811 Zea mays GRMZM2G331811 N 0.763
cassava4047.m1 Manihot esculenta cassava4047.m1 N 0.763
cassava4046.m1 Manihot esculenta cassava4046.m1 N 0.763
cassava24707.valid.m1 Manihot esculenta cassava24707.valid.m1 N 0.741
LOC_Os05g30140 Oryza sativa LOC_Os05g30140 N 0.748
LOC_Os03g22380 Oryza sativa LOC_Os03g22380 N 0.770
GSVIVG00038636001 Vitis vinifera GSVIVG00038636001 N 0.962
GSVIVG00031132001 Vitis vinifera GSVIVG00031132001 N 0.741
GSVIVG00027997001 Vitis vinifera GSVIVG00027997001 N 0.748
XM_002892438.1 Arabidopsis lyrata fgenesh2_kg.1__949__AT1G09140.1 N 0.763
XM_002874870.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002776 N 0.741
XM_002889376.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000165 N 0.733
BRADI2G11990 Brachypodium distachyon BRADI2G11990 N 0.756
BRADI1G62780 Brachypodium distachyon BRADI1G62780 N 0.763
BRADI1G18070 Brachypodium distachyon BRADI1G18070 N 0.778
BGIOSIBCE018731 Oryza indica BGIOSIBCE018731 N 0.748
BGIOSIBCE011068 Oryza indica BGIOSIBCE011068 N 0.770
BGIOSIBCE001550 Oryza indica BGIOSIBCE001550 N 0.763
At-SR34a Arabidopsis thaliana AT3G49430-TAIR-G N 0.894
At-SR30 Arabidopsis thaliana AT1G09140-TAIR-G N 0.761
SR34 Arabidopsis thaliana AT1G02840-TAIR-G N 0.739
LOC_Os07g47630 Oryza sativa LOC_Os07g47630 N 0.770
B9GSA0_POPTR Populus trichocarpa POPTR_0002s20650 N 0.756
cassava24706.valid.m1 Manihot esculenta cassava24706.valid.m1 N 0.741
cassava22829.valid.m1 Manihot esculenta cassava22829.valid.m1 N 0.756
cassava17475.valid.m1 Manihot esculenta cassava17475.valid.m1 N 0.932
cassava17474.valid.m1 Manihot esculenta cassava17474.valid.m1 N 0.932
cassava1174.valid.m1 Manihot esculenta cassava1174.valid.m1 N 0.763
cassava1173.valid.m1 Manihot esculenta cassava1173.valid.m1 N 0.763
30128.m008840 Ricinus communis 30128.m008840 N 0.756
29986.m001610 Ricinus communis 29986.m001610 N 0.756
29827.m002610 Ricinus communis 29827.m002610 N 0.947
XM_002875918.1 Arabidopsis lyrata scaffold_501926.1 N 0.909
Sb09g018110 Sorghum bicolor Sb09g018110 N 0.733
SB03G013010 Sorghum bicolor Sb03g013010 N 0.763
SB01G035680 Sorghum bicolor Sb01g035680 N 0.799
B9I9S0_POPTR Populus trichocarpa POPTR_0014s12440 N 0.770
B9I7H7_POPTR Populus trichocarpa POPTR_0013s01700 N 0.770
B9I218_POPTR Populus trichocarpa POPTR_0012s02870 N 0.939
B9N4J4_POPTR Populus trichocarpa POPTR_0005s02450 N 0.741
PK08657.1 Cannabis sativa PK08657.1 N 0.932