Cucsa.047430 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.047430 T49525_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.047430.1 RRM 196 261
Cucsa.047430.1 RRM 281 346
Cucsa.047430.1 RRM 688 759
Cucsa.047430.2 RRM 178 243
Cucsa.047430.2 RRM 263 328
Cucsa.047430.2 RRM 670 741
Cucsa.047430.3 RRM 196 261
Cucsa.047430.3 RRM 281 346

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.922
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.868
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.853
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.868
Glyma06g17250.1 Glycine max Glyma06g17250.1 N 0.705
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.760
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.912
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.917
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.922
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.868
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.863
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.922
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.922
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.922
cassava6430.valid.m1 Manihot esculenta cassava6430.valid.m1 N 0.917
cassava6431.valid.m1 Manihot esculenta cassava6431.valid.m1 N 0.917
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.902
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.853
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.917
mgf000415m Mimulus guttatus mgf000415m N 0.819
mgf005765m Mimulus guttatus mgf005765m N 0.873
MDP0000130792 Malus x domestica MDP0000130792 N 0.803
MDP0000235584 Malus x domestica MDP0000235584 N 0.765
MDP0000276328 Malus x domestica MDP0000276328 N 0.795
PDK_20s1383501g002 Phoenix dactylifera PDK_20s1383501g002 N 0.856
PDK_20s1502541g003 Phoenix dactylifera PDK_20s1502541g003 N 0.864
ppa000845m Prunus persica ppa000845m N 0.824
ppa000997m Prunus persica ppa000997m N 0.789
ppa001307m Prunus persica ppa001307m N 0.926
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.922
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.716
mgf014747m Mimulus guttatus mgf014747m N 0.883
mgf015667m Mimulus guttatus mgf015667m N 0.819
mgf023970m Mimulus guttatus mgf023970m N 0.826
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.858
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.785
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.863
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.721
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.912
ppa001327m Prunus persica ppa001327m N 0.912
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.922
PK15886.1 Cannabis sativa PK15886.1 N 0.814
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.794
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.804
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.716
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.745
GSVIVG00000782001 Vitis vinifera GSVIVG00000782001 N 0.902
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.868
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.868
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.907
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.863
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.844
PK19379.1 Cannabis sativa PK19379.1 N 0.755
PK24656.1 Cannabis sativa PK24656.1 N 0.912
PK25465.1 Cannabis sativa PK25465.1 N 0.892
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.868
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.863
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.725
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.779
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.799
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.779
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.799
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.844
29693.m002077 Ricinus communis 29693.m002077 N 0.892
30128.m008555 Ricinus communis 30128.m008555 N 0.795
30147.m014409 Ricinus communis 30147.m014409 N 0.868
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.819
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.770
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.770
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.765
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.765
28350.m000106 Ricinus communis 28350.m000106 N 0.892
SB10G000350 Sorghum bicolor Sb10g000350 N 0.863
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.800
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.902
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.789
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.907
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.809
B9IFK9_POPTR Populus trichocarpa POPTR_0015s11730 N 0.805
SB04G021130 Sorghum bicolor Sb04g021130 N 0.795
SB06G014670 Sorghum bicolor Sb06g014670 N 0.706
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.922