CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw.103.95.1
(
Nematostella vectensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw.103.95.1
T53034_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw.103.95.1
RRM
4
66
IFLGRLPRDVRESDVEKFLRGYGKIRDISLKRGYGFVEFDDHRDAEDAVHDLNGRDLIGERVV
gw.103.95.1
RRM
109
174
VIVENLSSRTSWQDLKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTELGGRRIR
Links
Other
RRM
family RBPs
Other
Nematostella vectensis
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE032955
Oryza indica
BGIOSIBCE032955
N
0.000
Medtr3g162990
Medicago truncatula
Medtr3g162990
N
0.000
Medtr3g162980
Medicago truncatula
Medtr3g162980
N
0.000
GRMZM2G127340
Zea mays
GRMZM2G127340
N
0.000
GRMZM2G127168
Zea mays
GRMZM2G127168
N
0.000
Glyma06g01090.1
Glycine max
Glyma06g01090.1
N
0.000
Glyma04g01070.1
Glycine max
Glyma04g01070.1
N
0.000
cassava3214.m1
Manihot esculenta
cassava3214.m1
N
0.000
cassava25039.valid.m1
Manihot esculenta
cassava25039.valid.m1
N
0.000
30170.m014131
Ricinus communis
30170.m014131
N
0.000
30131.m007124
Ricinus communis
30131.m007124
N
0.000
SB01G030150
Sorghum bicolor
Sb01g030150
N
0.000
LOC_Os10g39820
Oryza sativa
LOC_Os10g39820
N
0.000
GSVIVG00024180001
Vitis vinifera
GSVIVG00024180001
N
0.000
GSVIVG00009823001
Vitis vinifera
GSVIVG00009823001
N
0.000
BRADI3G32520
Brachypodium distachyon
BRADI3G32520
N
0.000
chr1.CM0231.600.nd
Lotus japonicus
chr1.CM0231.600.nd
N
0.000