30131.m007124 (Ricinus communis)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 30131.m007124 T13217_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
30131.m007124 CCHC ZF 49 66
30131.m007124 CCHC ZF 68 85
30131.m007124 CCHC ZF 87 104
30131.m007124 CCHC ZF 106 123
30131.m007124 CCHC ZF 132 149
30131.m007124 CCHC ZF 151 168
30131.m007124 CCHC ZF 170 187
30131.m007124 CCHC ZF 202 218
30131.m007124 CCHC ZF 222 239

Links

Other CCHC ZF family RBPs
Other Ricinus communis RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava3214.m1 Manihot esculenta cassava3214.m1 N 0.975
Glyma04g01070.1 Glycine max Glyma04g01070.1 N 0.901
Glyma06g01090.1 Glycine max Glyma06g01090.1 N 0.901
chr1.CM0231.600.nd Lotus japonicus chr1.CM0231.600.nd N 0.894
Medtr3g162990 Medicago truncatula Medtr3g162990 N 0.857
GSVIVG00024180001 Vitis vinifera GSVIVG00024180001 N 0.852
Medtr3g162980 Medicago truncatula Medtr3g162980 N 0.851
GSVIVG00009823001 Vitis vinifera GSVIVG00009823001 N 0.832
cassava25039.valid.m1 Manihot esculenta cassava25039.valid.m1 N 0.814
30170.m014131 Ricinus communis 30170.m014131 N 0.807
BGIOSIBCE032955 Oryza indica BGIOSIBCE032955 N 0.772
LOC_Os10g39820 Oryza sativa LOC_Os10g39820 N 0.772
BRADI3G32520 Brachypodium distachyon BRADI3G32520 N 0.759
GRMZM2G127168 Zea mays GRMZM2G127168 N 0.741
GRMZM2G127340 Zea mays GRMZM2G127340 N 0.728
SB01G030150 Sorghum bicolor Sb01g030150 N 0.728
GSVIVG00016581001 Vitis vinifera GSVIVG00016581001 N 0.720
cassava13805.valid.m1 Manihot esculenta cassava13805.valid.m1 N 0.702