GSVIVG00024180001 (Vitis vinifera)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 GSVIVG00024180001 T10664_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00024180001 CCHC ZF 41 58
GSVIVT00024180001 CCHC ZF 60 77
GSVIVT00024180001 CCHC ZF 79 96
GSVIVT00024180001 CCHC ZF 98 115
GSVIVT00024180001 CCHC ZF 124 141
GSVIVT00024180001 CCHC ZF 143 160
GSVIVT00024180001 CCHC ZF 162 179
GSVIVT00024180001 CCHC ZF 198 215
GSVIVT00024180001 CCHC ZF 218 235

Links

Other CCHC ZF family RBPs
Other Vitis vinifera RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma04g01070.1 Glycine max Glyma04g01070.1 N 0.895
Glyma06g01090.1 Glycine max Glyma06g01090.1 N 0.895
chr1.CM0231.600.nd Lotus japonicus chr1.CM0231.600.nd N 0.883
cassava3214.m1 Manihot esculenta cassava3214.m1 N 0.877
Medtr3g162990 Medicago truncatula Medtr3g162990 N 0.870
Medtr3g162980 Medicago truncatula Medtr3g162980 N 0.858
30131.m007124 Ricinus communis 30131.m007124 N 0.852
GSVIVG00009823001 Vitis vinifera GSVIVG00009823001 N 0.840
cassava25039.valid.m1 Manihot esculenta cassava25039.valid.m1 N 0.815
30170.m014131 Ricinus communis 30170.m014131 N 0.809
BGIOSIBCE032955 Oryza indica BGIOSIBCE032955 N 0.778
LOC_Os10g39820 Oryza sativa LOC_Os10g39820 N 0.778
GSVIVG00016581001 Vitis vinifera GSVIVG00016581001 N 0.765
BRADI3G32520 Brachypodium distachyon BRADI3G32520 N 0.753
GRMZM2G127168 Zea mays GRMZM2G127168 N 0.747
cassava13805.valid.m1 Manihot esculenta cassava13805.valid.m1 N 0.741
SB01G030150 Sorghum bicolor Sb01g030150 N 0.728
GRMZM2G127340 Zea mays GRMZM2G127340 N 0.728
GRMZM2G003068 Zea mays GRMZM2G003068 N 0.704