chr1.CM0231.600.nd (Lotus japonicus)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 chr1.CM0231.600.nd T15274_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0231.600.nd CCHC ZF 43 60
chr1.CM0231.600.nd CCHC ZF 62 79
chr1.CM0231.600.nd CCHC ZF 81 98
chr1.CM0231.600.nd CCHC ZF 100 117
chr1.CM0231.600.nd CCHC ZF 126 143
chr1.CM0231.600.nd CCHC ZF 145 162
chr1.CM0231.600.nd CCHC ZF 164 181
chr1.CM0231.600.nd CCHC ZF 210 226
chr1.CM0231.600.nd CCHC ZF 230 247

Links

Other CCHC ZF family RBPs
Other Lotus japonicus RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma04g01070.1 Glycine max Glyma04g01070.1 N 0.981
Glyma06g01090.1 Glycine max Glyma06g01090.1 N 0.981
Medtr3g162990 Medicago truncatula Medtr3g162990 N 0.925
cassava3214.m1 Manihot esculenta cassava3214.m1 N 0.919
Medtr3g162980 Medicago truncatula Medtr3g162980 N 0.919
30131.m007124 Ricinus communis 30131.m007124 N 0.894
GSVIVG00024180001 Vitis vinifera GSVIVG00024180001 N 0.883
GSVIVG00009823001 Vitis vinifera GSVIVG00009823001 N 0.832
LOC_Os10g39820 Oryza sativa LOC_Os10g39820 N 0.827
BGIOSIBCE032955 Oryza indica BGIOSIBCE032955 N 0.827
cassava25039.valid.m1 Manihot esculenta cassava25039.valid.m1 N 0.820
30170.m014131 Ricinus communis 30170.m014131 N 0.801
BRADI3G32520 Brachypodium distachyon BRADI3G32520 N 0.790
GRMZM2G127168 Zea mays GRMZM2G127168 N 0.778
GRMZM2G127340 Zea mays GRMZM2G127340 N 0.765
SB01G030150 Sorghum bicolor Sb01g030150 N 0.759
GSVIVG00016581001 Vitis vinifera GSVIVG00016581001 N 0.739
cassava13805.valid.m1 Manihot esculenta cassava13805.valid.m1 N 0.720
MDP0000273719 Malus x domestica MDP0000273719 N 0.714