GSVIVG00009823001 (Vitis vinifera)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 GSVIVG00009823001 T10650_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00009823001 CCHC ZF 49 66
GSVIVT00009823001 CCHC ZF 68 85
GSVIVT00009823001 CCHC ZF 87 104
GSVIVT00009823001 CCHC ZF 106 123
GSVIVT00009823001 CCHC ZF 132 149
GSVIVT00009823001 CCHC ZF 151 168
GSVIVT00009823001 CCHC ZF 170 187
GSVIVT00009823001 CCHC ZF 206 222
GSVIVT00009823001 CCHC ZF 226 243

Links

Other CCHC ZF family RBPs
Other Vitis vinifera RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava25039.valid.m1 Manihot esculenta cassava25039.valid.m1 N 0.894
30170.m014131 Ricinus communis 30170.m014131 N 0.882
cassava3214.m1 Manihot esculenta cassava3214.m1 N 0.845
GSVIVG00024180001 Vitis vinifera GSVIVG00024180001 N 0.840
chr1.CM0231.600.nd Lotus japonicus chr1.CM0231.600.nd N 0.832
Glyma06g01090.1 Glycine max Glyma06g01090.1 N 0.832
Glyma04g01070.1 Glycine max Glyma04g01070.1 N 0.832
30131.m007124 Ricinus communis 30131.m007124 N 0.832
Medtr3g162980 Medicago truncatula Medtr3g162980 N 0.820
Medtr3g162990 Medicago truncatula Medtr3g162990 N 0.801
BGIOSIBCE032955 Oryza indica BGIOSIBCE032955 N 0.753
LOC_Os10g39820 Oryza sativa LOC_Os10g39820 N 0.753
GSVIVG00016581001 Vitis vinifera GSVIVG00016581001 N 0.745
BRADI3G32520 Brachypodium distachyon BRADI3G32520 N 0.741
GRMZM2G127340 Zea mays GRMZM2G127340 N 0.735
SB01G030150 Sorghum bicolor Sb01g030150 N 0.735
cassava13805.valid.m1 Manihot esculenta cassava13805.valid.m1 N 0.733
GRMZM2G127168 Zea mays GRMZM2G127168 N 0.728
GRMZM2G003068 Zea mays GRMZM2G003068 N 0.710