GRMZM2G127340 (Zea mays)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 GRMZM2G127340 T15033_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G127340_P01 CCHC ZF 39 56
GRMZM2G127340_P01 CCHC ZF 58 75
GRMZM2G127340_P01 CCHC ZF 77 94
GRMZM2G127340_P01 CCHC ZF 96 113
GRMZM2G127340_P01 CCHC ZF 122 139
GRMZM2G127340_P01 CCHC ZF 141 158
GRMZM2G127340_P01 CCHC ZF 160 177
GRMZM2G127340_P01 CCHC ZF 211 228
GRMZM2G127340_P01 CCHC ZF 232 249
GRMZM2G127340_P02 CCHC ZF 39 56
GRMZM2G127340_P02 CCHC ZF 58 75
GRMZM2G127340_P02 CCHC ZF 77 94
GRMZM2G127340_P02 CCHC ZF 96 113
GRMZM2G127340_P02 CCHC ZF 122 139
GRMZM2G127340_P02 CCHC ZF 141 158
GRMZM2G127340_P02 CCHC ZF 160 177
GRMZM2G127340_P02 CCHC ZF 211 228
GRMZM2G127340_P02 CCHC ZF 232 249
GRMZM2G127340_P03 CCHC ZF 9 26
GRMZM2G127340_P03 CCHC ZF 35 52
GRMZM2G127340_P03 CCHC ZF 54 71
GRMZM2G127340_P03 CCHC ZF 73 90
GRMZM2G127340_P03 CCHC ZF 124 141
GRMZM2G127340_P03 CCHC ZF 145 162
GRMZM2G127340_P04 CCHC ZF 9 26
GRMZM2G127340_P04 CCHC ZF 35 52
GRMZM2G127340_P04 CCHC ZF 54 71
GRMZM2G127340_P04 CCHC ZF 73 90
GRMZM2G127340_P04 CCHC ZF 124 141
GRMZM2G127340_P04 CCHC ZF 145 162

Links

Other CCHC ZF family RBPs
Other Zea mays RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB01G030150 Sorghum bicolor Sb01g030150 N 0.969
GRMZM2G127168 Zea mays GRMZM2G127168 N 0.969
BGIOSIBCE032955 Oryza indica BGIOSIBCE032955 N 0.870
LOC_Os10g39820 Oryza sativa LOC_Os10g39820 N 0.870
BRADI3G32520 Brachypodium distachyon BRADI3G32520 N 0.858
chr1.CM0231.600.nd Lotus japonicus chr1.CM0231.600.nd N 0.765
Glyma04g01070.1 Glycine max Glyma04g01070.1 N 0.759
cassava25039.valid.m1 Manihot esculenta cassava25039.valid.m1 N 0.759
Medtr3g162990 Medicago truncatula Medtr3g162990 N 0.759
Glyma06g01090.1 Glycine max Glyma06g01090.1 N 0.759
Medtr3g162980 Medicago truncatula Medtr3g162980 N 0.747
30170.m014131 Ricinus communis 30170.m014131 N 0.747
GSVIVG00009823001 Vitis vinifera GSVIVG00009823001 N 0.735
cassava3214.m1 Manihot esculenta cassava3214.m1 N 0.735
30131.m007124 Ricinus communis 30131.m007124 N 0.728
GSVIVG00024180001 Vitis vinifera GSVIVG00024180001 N 0.728