Medtr3g162980 (Medicago truncatula)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 Medtr3g162980 T15085_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr3g162980.1 CCHC ZF 54 71
Medtr3g162980.1 CCHC ZF 73 90
Medtr3g162980.1 CCHC ZF 92 109
Medtr3g162980.1 CCHC ZF 111 128
Medtr3g162980.1 CCHC ZF 137 154
Medtr3g162980.1 CCHC ZF 156 173
Medtr3g162980.1 CCHC ZF 175 192
Medtr3g162980.1 CCHC ZF 217 233
Medtr3g162980.1 CCHC ZF 238 255

Links

Other CCHC ZF family RBPs
Other Medicago truncatula RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma06g01090.1 Glycine max Glyma06g01090.1 N 0.925
Glyma04g01070.1 Glycine max Glyma04g01070.1 N 0.925
chr1.CM0231.600.nd Lotus japonicus chr1.CM0231.600.nd N 0.919
Medtr3g162990 Medicago truncatula Medtr3g162990 N 0.901
cassava3214.m1 Manihot esculenta cassava3214.m1 N 0.876
GSVIVG00024180001 Vitis vinifera GSVIVG00024180001 N 0.858
30131.m007124 Ricinus communis 30131.m007124 N 0.851
GSVIVG00009823001 Vitis vinifera GSVIVG00009823001 N 0.820
cassava25039.valid.m1 Manihot esculenta cassava25039.valid.m1 N 0.801
LOC_Os10g39820 Oryza sativa LOC_Os10g39820 N 0.790
BGIOSIBCE032955 Oryza indica BGIOSIBCE032955 N 0.790
30170.m014131 Ricinus communis 30170.m014131 N 0.776
BRADI3G32520 Brachypodium distachyon BRADI3G32520 N 0.759
GRMZM2G127168 Zea mays GRMZM2G127168 N 0.759
GRMZM2G127340 Zea mays GRMZM2G127340 N 0.747
SB01G030150 Sorghum bicolor Sb01g030150 N 0.741
GSVIVG00016581001 Vitis vinifera GSVIVG00016581001 N 0.727
cassava13805.valid.m1 Manihot esculenta cassava13805.valid.m1 N 0.714