THAPSDRAFT_105 (Thalassiosira pseudonana)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 Thaps105 T60787_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.816
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Thaps105 S1 41 116

Links

Other S1 family RBPs
Other Thalassiosira pseudonana RBPs

265 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1 Homo sapiens ENSG00000100836 D 0.000
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.000
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.000
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.000
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.000
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.000
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.000
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.000
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.000
SNAPOd2T00003132001 Oikopleura dioica SNAPOd2T00003132001 I 0.000
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.000
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.000
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.000
AAG36902 Xenopus laevis AAG36902 I 0.000
AAH45063 Xenopus laevis AAH45063 I 0.000
AAH73657 Xenopus laevis AAH73657 I 0.000
AAR26262 Xenopus laevis AAR26262 I 0.000
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.000
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.000
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.000
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.000
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.000
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.000
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.000
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.000
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.000
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.000
pabpn1 Danio rerio ENSDARG00000045373 I 0.000
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.000
LOC100055599 Equus caballus ENSECAG00000011652 I 0.000
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.000
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.000
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.000
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.000
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.000
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.000
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.000
Q9DDY9 Xenopus laevis Q9DDY9 I 0.000