pabpn1 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000014597 T42896_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.971
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000031935 RRM 165 234

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

101 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1 Anolis carolinensis ENSACAG00000006185 I 1.000
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.986
AAH45063 Xenopus laevis AAH45063 I 0.986
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.971
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.971
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.971
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.971
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.971
AAR26262 Xenopus laevis AAR26262 I 0.971
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.971
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.971
AAG36902 Xenopus laevis AAG36902 I 0.971
AAH73657 Xenopus laevis AAH73657 I 0.971
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.971
PABPN1 Homo sapiens ENSG00000100836 D 0.971
LOC100055599 Equus caballus ENSECAG00000011652 I 0.971
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.971
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.971
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.971
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.971
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.971
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.971
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.971
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.971
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.971
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.971
Q9DDY9 Xenopus laevis Q9DDY9 I 0.971
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.957
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.943
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.930
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.930
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.930
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.930
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.929
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.929
pabpn1 Danio rerio ENSDARG00000045373 I 0.915
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.914
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.871
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.845
LOAG_03634 Loa loa LOAG_03634 I 0.845
Bm1_48895 Brugia malayi Bm1_48895 I 0.845
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.843
PHUM037550 Pediculus humanus PHUM037550 I 0.843
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.831
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.829
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.814
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.814
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.814
AAEL015143 Aedes aegypti AAEL015143 I 0.814
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.814
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.814
AGAP005117 Anopheles gambiae AGAP005117 I 0.814
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.800
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.789
GI19259 Drosophila mojavensis FBgn0141998 I 0.786
GM21011 Drosophila sechellia FBgn0175892 I 0.786
GH21908 Drosophila grimshawi FBgn0129369 I 0.786
GG23338 Drosophila erecta FBgn0115489 I 0.786
GF13666 Drosophila ananassae FBgn0090694 I 0.786
GJ22134 Drosophila virilis FBgn0209248 I 0.786
Pabp2 Drosophila melanogaster FBgn0005648 I 0.786
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.786
GD10545 Drosophila simulans FBgn0182316 I 0.786
Pabp2 Drosophila yakuba FBgn0068105 I 0.786
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.786
GK23192 Drosophila willistoni FBgn0225154 I 0.786
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.775
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.771
GL17107 Drosophila persimilis FBgn0154711 I 0.771
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.761
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.757
156918 Helobdella robusta 156918 I 0.757
SNAPOd2T00018428001 Oikopleura dioica SNAPOd2T00018428001 I 0.743
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.732
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.729
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.729
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.729
CBN10290 Caenorhabditis brenneri CBN10290 I 0.729
CJA15148 Caenorhabditis japonica CJA15148 I 0.729
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.729
CBG03741 Caenorhabditis briggsae CBG03741 I 0.729
SNAPOd2T00003132001 Oikopleura dioica SNAPOd2T00003132001 I 0.729
CRE07990 Caenorhabditis remanei CRE07990 I 0.729
CBN00953 Caenorhabditis brenneri CBN00953 I 0.729
PABPN1 Gallus gallus ENSGALG00000006242 I 0.729
ENSCSAVG00000002001 Ciona savignyi ENSCSAVG00000002001 I 0.718
pabp-2 Caenorhabditis elegans C17E4.5 I 0.714
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.714
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.714
PABPN1L Homo sapiens ENSG00000205022 I 0.714
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.714
CBN16301 Caenorhabditis brenneri CBN16301 I 0.714
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.704
PredSwiss_CON654.3 Pneumocystis carinii PredSwiss_CON654.3 I 0.700
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.700
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.700
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.700
Smp_007630 Schistosoma mansoni Smp_007630 I 0.700
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.700
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.700
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.700