estExt_Genewise1Plus.C_2670068 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_2670068 T51435_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.843
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_2670068 RRM 113 182

Links

Other RRM family RBPs
Other Capitella teleta RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.900
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.871
PABPN1 Homo sapiens ENSG00000100836 D 0.843
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.843
LOC100055599 Equus caballus ENSECAG00000011652 I 0.843
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.843
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.843
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.843
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.843
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.843
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.843
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.843
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.843
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.843
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.843
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.843
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.843
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.843
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.843
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.843
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.843
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.843
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.843
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.843
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.831
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.829
Q9DDY9 Xenopus laevis Q9DDY9 I 0.829
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.829
AAR26262 Xenopus laevis AAR26262 I 0.829
AAG36902 Xenopus laevis AAG36902 I 0.829
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.829
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.829
AAH45063 Xenopus laevis AAH45063 I 0.829
AAH73657 Xenopus laevis AAH73657 I 0.829
pabpn1 Danio rerio ENSDARG00000045373 I 0.817
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.814
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.814
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.814
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.803
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.803
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.803
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.803
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.803
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.803
156918 Helobdella robusta 156918 I 0.786
PHUM037550 Pediculus humanus PHUM037550 I 0.786
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.786
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.786
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.786
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.786
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.786
Bm1_48895 Brugia malayi Bm1_48895 I 0.775
LOAG_03634 Loa loa LOAG_03634 I 0.775
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.775
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.761
CJA15148 Caenorhabditis japonica CJA15148 I 0.757
CBG03741 Caenorhabditis briggsae CBG03741 I 0.757
CBN00953 Caenorhabditis brenneri CBN00953 I 0.757
CRE07990 Caenorhabditis remanei CRE07990 I 0.757
CBN10290 Caenorhabditis brenneri CBN10290 I 0.757
CBN16301 Caenorhabditis brenneri CBN16301 I 0.743
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.732
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.729
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.729
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.729
AGAP005117 Anopheles gambiae AGAP005117 I 0.729
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.729
AAEL015143 Aedes aegypti AAEL015143 I 0.729
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.729
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.714
PABPN1L Homo sapiens ENSG00000205022 I 0.714
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.714
pabp-2 Caenorhabditis elegans C17E4.5 I 0.714
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.704
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.704
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.704
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.700
SNAPOd2T00018428001 Oikopleura dioica SNAPOd2T00018428001 I 0.700
GK23192 Drosophila willistoni FBgn0225154 I 0.700
PABPN1 Gallus gallus ENSGALG00000006242 I 0.700
GJ22134 Drosophila virilis FBgn0209248 I 0.700
GF13666 Drosophila ananassae FBgn0090694 I 0.700
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.700
Pabp2 Drosophila yakuba FBgn0068105 I 0.700
Pabp2 Drosophila melanogaster FBgn0005648 I 0.700
GG23338 Drosophila erecta FBgn0115489 I 0.700
GH21908 Drosophila grimshawi FBgn0129369 I 0.700
GD10545 Drosophila simulans FBgn0182316 I 0.700
GM21011 Drosophila sechellia FBgn0175892 I 0.700
GI19259 Drosophila mojavensis FBgn0141998 I 0.700
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.700