PABPN1 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000004535 T39075_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.957
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000005593 RRM 186 255

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

105 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.971
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.957
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.957
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.957
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.957
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.957
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.957
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.957
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.957
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.957
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.957
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.957
PABPN1 Homo sapiens ENSG00000100836 D 0.957
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.957
LOC100055599 Equus caballus ENSECAG00000011652 I 0.957
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.957
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.957
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.957
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.957
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.957
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.957
AAH45063 Xenopus laevis AAH45063 I 0.943
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.943
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.943
Q9DDY9 Xenopus laevis Q9DDY9 I 0.929
AAR26262 Xenopus laevis AAR26262 I 0.929
AAH73657 Xenopus laevis AAH73657 I 0.929
AAG36902 Xenopus laevis AAG36902 I 0.929
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.929
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.929
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.914
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.914
pabpn1 Danio rerio ENSDARG00000045373 I 0.901
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.900
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.887
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.887
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.887
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.887
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.871
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.859
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.843
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.843
PHUM037550 Pediculus humanus PHUM037550 I 0.843
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.843
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.831
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.831
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.829
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.829
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.829
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.814
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.814
Bm1_48895 Brugia malayi Bm1_48895 I 0.803
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.803
LOAG_03634 Loa loa LOAG_03634 I 0.803
156918 Helobdella robusta 156918 I 0.800
AGAP005117 Anopheles gambiae AGAP005117 I 0.771
AAEL015143 Aedes aegypti AAEL015143 I 0.771
CBG03741 Caenorhabditis briggsae CBG03741 I 0.771
CBN00953 Caenorhabditis brenneri CBN00953 I 0.771
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.771
CJA15148 Caenorhabditis japonica CJA15148 I 0.771
CBN10290 Caenorhabditis brenneri CBN10290 I 0.771
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.771
CRE07990 Caenorhabditis remanei CRE07990 I 0.771
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.757
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.757
CBN16301 Caenorhabditis brenneri CBN16301 I 0.757
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.757
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.757
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.746
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.743
GD10545 Drosophila simulans FBgn0182316 I 0.743
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.743
GM21011 Drosophila sechellia FBgn0175892 I 0.743
GG23338 Drosophila erecta FBgn0115489 I 0.743
GI19259 Drosophila mojavensis FBgn0141998 I 0.743
Pabp2 Drosophila melanogaster FBgn0005648 I 0.743
PABPN1L Homo sapiens ENSG00000205022 I 0.743
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.743
SNAPOd2T00018428001 Oikopleura dioica SNAPOd2T00018428001 I 0.743
GJ22134 Drosophila virilis FBgn0209248 I 0.743
GK23192 Drosophila willistoni FBgn0225154 I 0.743
Pabp2 Drosophila yakuba FBgn0068105 I 0.743
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.743
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.743
GH21908 Drosophila grimshawi FBgn0129369 I 0.743
PABPN1 Gallus gallus ENSGALG00000006242 I 0.743
GF13666 Drosophila ananassae FBgn0090694 I 0.743
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.732
GL17107 Drosophila persimilis FBgn0154711 I 0.729
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.729
pabp-2 Caenorhabditis elegans C17E4.5 I 0.729
Smp_007630 Schistosoma mansoni Smp_007630 I 0.729
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.718
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.718
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.714
SNAPOd2T00003132001 Oikopleura dioica SNAPOd2T00003132001 I 0.714
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.714
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.714
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.704
PTTG_05043 Puccinia triticina PTTG_05043 N 0.700
PGTG_01300 Puccinia graminis PGTG_01300 N 0.700
gw1.7.208.1 Melampsora laricis populina gw1.7.208.1 N 0.700
PABPN1L Oryzias latipes ENSORLG00000005534 I 0.700
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.700