PABPN1 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000031227 T38142_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000022698 RRM 19 88

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 1.000
PABPN1 Cavia porcellus ENSCPOG00000025574 I 1.000
PABPN1 Pan troglodytes ENSPTRG00000006168 I 1.000
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 1.000
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 1.000
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 1.000
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 1.000
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 1.000
PABPN1 Sus scrofa ENSSSCG00000002023 I 1.000
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 1.000
LOC100055599 Equus caballus ENSECAG00000011652 I 1.000
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 1.000
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 1.000
PABPN1 Homo sapiens ENSG00000100836 D 1.000
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 1.000
PABPN1 Macaca mulatta ENSMMUG00000014747 I 1.000
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 1.000
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 1.000
Pabpn1 Mus musculus ENSMUSG00000022194 I 1.000
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.986
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.986
AAH45063 Xenopus laevis AAH45063 I 0.986
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.971
AAR26262 Xenopus laevis AAR26262 I 0.971
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.971
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.971
AAH73657 Xenopus laevis AAH73657 I 0.971
AAG36902 Xenopus laevis AAG36902 I 0.971
Q9DDY9 Xenopus laevis Q9DDY9 I 0.971
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.957
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.957
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.943
pabpn1 Danio rerio ENSDARG00000045373 I 0.915
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.901
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.901
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.901
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.901
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.900
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.857
LOAG_03634 Loa loa LOAG_03634 I 0.845
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.845
Bm1_48895 Brugia malayi Bm1_48895 I 0.845
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.843
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.831
PHUM037550 Pediculus humanus PHUM037550 I 0.829
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.829
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.829
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.814
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.814
AAEL015143 Aedes aegypti AAEL015143 I 0.814
AGAP005117 Anopheles gambiae AGAP005117 I 0.814
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.814
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.803
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.800
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.800
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.800
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.789
GK23192 Drosophila willistoni FBgn0225154 I 0.786
GH21908 Drosophila grimshawi FBgn0129369 I 0.786
GG23338 Drosophila erecta FBgn0115489 I 0.786
GI19259 Drosophila mojavensis FBgn0141998 I 0.786
Pabp2 Drosophila melanogaster FBgn0005648 I 0.786
GM21011 Drosophila sechellia FBgn0175892 I 0.786
GD10545 Drosophila simulans FBgn0182316 I 0.786
GJ22134 Drosophila virilis FBgn0209248 I 0.786
GF13666 Drosophila ananassae FBgn0090694 I 0.786
156918 Helobdella robusta 156918 I 0.786
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.786
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.786
Pabp2 Drosophila yakuba FBgn0068105 I 0.786
SNAPOd2T00018428001 Oikopleura dioica SNAPOd2T00018428001 I 0.771
GL17107 Drosophila persimilis FBgn0154711 I 0.771
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.761
CBN10290 Caenorhabditis brenneri CBN10290 I 0.757
CBN00953 Caenorhabditis brenneri CBN00953 I 0.757
CJA15148 Caenorhabditis japonica CJA15148 I 0.757
CBG03741 Caenorhabditis briggsae CBG03741 I 0.757
CRE07990 Caenorhabditis remanei CRE07990 I 0.757
PABPN1 Gallus gallus ENSGALG00000006242 I 0.757
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.757
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.757
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.757
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.757
PABPN1L Homo sapiens ENSG00000205022 I 0.743
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.743
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.743
CBN16301 Caenorhabditis brenneri CBN16301 I 0.743
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.743
pabp-2 Caenorhabditis elegans C17E4.5 I 0.743
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.732
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.729
SNAPOd2T00003132001 Oikopleura dioica SNAPOd2T00003132001 I 0.729
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.729
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.729
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.729
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.718
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.718
PABPN1L Oryzias latipes ENSORLG00000005534 I 0.714
LOC100051357 Equus caballus ENSECAG00000000378 I 0.704
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.704
Smp_007630 Schistosoma mansoni Smp_007630 I 0.700
AAR26263 Xenopus laevis AAR26263 I 0.700
Q6TY21 Xenopus laevis Q6TY21 I 0.700
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.700
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.700
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.700
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.700
2JWN_B Xenopus laevis 2JWN_B I 0.700
AAI70309 Xenopus laevis AAI70309 I 0.700
PredSwiss_CON654.3 Pneumocystis carinii PredSwiss_CON654.3 I 0.700
2JWN_A Xenopus laevis 2JWN_A I 0.700
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.700
AAI70311 Xenopus laevis AAI70311 I 0.700