PABPN1 (Ornithorhynchus anatinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOANG00000009218 T39517_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.986
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000014672 RRM 14 83

Links

Other RRM family RBPs
Other Ornithorhynchus anatinus RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.986
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.986
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.986
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.986
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.986
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.986
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.986
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.986
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.986
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.986
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.986
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.986
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.986
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.986
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.986
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.986
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.986
PABPN1 Homo sapiens ENSG00000100836 D 0.986
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.986
LOC100055599 Equus caballus ENSECAG00000011652 I 0.986
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.971
AAH45063 Xenopus laevis AAH45063 I 0.971
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.971
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.957
AAH73657 Xenopus laevis AAH73657 I 0.957
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.957
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.957
AAR26262 Xenopus laevis AAR26262 I 0.957
Q9DDY9 Xenopus laevis Q9DDY9 I 0.957
AAG36902 Xenopus laevis AAG36902 I 0.957
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.943
pabpn1 Danio rerio ENSDARG00000045373 I 0.930
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.929
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.915
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.915
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.915
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.915
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.914
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.843
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.843
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.843
PHUM037550 Pediculus humanus PHUM037550 I 0.843
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.843
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.831
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.831
LOAG_03634 Loa loa LOAG_03634 I 0.831
Bm1_48895 Brugia malayi Bm1_48895 I 0.831
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.829
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.814
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.803
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.803
156918 Helobdella robusta 156918 I 0.800
AGAP005117 Anopheles gambiae AGAP005117 I 0.800
AAEL015143 Aedes aegypti AAEL015143 I 0.800
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.800
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.800
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.800
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.800
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.786
GI19259 Drosophila mojavensis FBgn0141998 I 0.771
Pabp2 Drosophila melanogaster FBgn0005648 I 0.771
GM21011 Drosophila sechellia FBgn0175892 I 0.771
GH21908 Drosophila grimshawi FBgn0129369 I 0.771
GG23338 Drosophila erecta FBgn0115489 I 0.771
Pabp2 Drosophila yakuba FBgn0068105 I 0.771
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.771
GD10545 Drosophila simulans FBgn0182316 I 0.771
GF13666 Drosophila ananassae FBgn0090694 I 0.771
GJ22134 Drosophila virilis FBgn0209248 I 0.771
GK23192 Drosophila willistoni FBgn0225154 I 0.771
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.757
SNAPOd2T00018428001 Oikopleura dioica SNAPOd2T00018428001 I 0.757
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.757
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.757
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.757
PABPN1 Gallus gallus ENSGALG00000006242 I 0.757
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.757
GL17107 Drosophila persimilis FBgn0154711 I 0.757
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.746
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.743
PABPN1L Homo sapiens ENSG00000205022 I 0.743
CBN00953 Caenorhabditis brenneri CBN00953 I 0.743
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.743
CRE07990 Caenorhabditis remanei CRE07990 I 0.743
CBN10290 Caenorhabditis brenneri CBN10290 I 0.743
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.743
CJA15148 Caenorhabditis japonica CJA15148 I 0.743
CBG03741 Caenorhabditis briggsae CBG03741 I 0.743
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.732
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.729
SNAPOd2T00003132001 Oikopleura dioica SNAPOd2T00003132001 I 0.729
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.729
CBN16301 Caenorhabditis brenneri CBN16301 I 0.729
pabp-2 Caenorhabditis elegans C17E4.5 I 0.729
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.729
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.718
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.718
PABPN1L Oryzias latipes ENSORLG00000005534 I 0.714
LOC100051357 Equus caballus ENSECAG00000000378 I 0.704
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.704
2JWN_A Xenopus laevis 2JWN_A I 0.700
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.700
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.700
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.700
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.700
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.700
Smp_007630 Schistosoma mansoni Smp_007630 I 0.700
2JWN_B Xenopus laevis 2JWN_B I 0.700
Q6TY21 Xenopus laevis Q6TY21 I 0.700
AAR26263 Xenopus laevis AAR26263 I 0.700
AAI70311 Xenopus laevis AAI70311 I 0.700
AAI70309 Xenopus laevis AAI70309 I 0.700
UM02401 Ustilago maydis UM02401 N 0.700