CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMGAG00000014689
(
Meleagris gallopavo
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSMGAG00000014689
T00544_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000015563
CCCH ZF
162
188
KDRANCPFYIKTGSCRFGDRCSRKHNY
ENSMGAP00000015563
RRM
235
293
YEDVLPEFQNVGKVVQFKVSCNYEPHLRGNVYVQYQTEKDCQAALALFSGRWYAGRQLH
ENSMGAP00000015563
CCCH ZF
302
327
WKTAICGLFERQKCPRGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Meleagris gallopavo
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNAPOd2T00018901001
Oikopleura dioica
SNAPOd2T00018901001
N
0.000
SNAPOd2T00020450001
Oikopleura dioica
SNAPOd2T00020450001
N
0.000
SNAPOd2T00020451001
Oikopleura dioica
SNAPOd2T00020451001
N
0.000
SNAPOd2T00026452001
Oikopleura dioica
SNAPOd2T00026452001
N
0.000
SNAPOd2T00027516001
Oikopleura dioica
SNAPOd2T00027516001
N
0.000