LOAG_11791 (Loa loa)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 LOAG_11791 T16669_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.718
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOAG_11791T0 CSD 1 63

Links

Other CSD family RBPs
Other Loa loa RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Bm1_57515 Brugia malayi Bm1_57515 I 0.887
CBN16711 Caenorhabditis brenneri CBN16711 I 0.704
cey-1 Caenorhabditis elegans F33A8.3 I 0.704
CJA05984 Caenorhabditis japonica CJA05984 I 0.718
CRE01789 Caenorhabditis remanei CRE01789 I 0.704
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.734
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.704
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.746
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.746
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.718
Minc12652 Meloidogyne incognita Minc12652 I 0.714
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.732
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.704
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.887
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.704
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.704
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.742