WUBG_03960 (Wuchereria bancrofti)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 WUBG_03960 T16683_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.789
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.789
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.764
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.764
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.764
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
WUBG_03960T0 CSD 36 106

Links

Other CSD family RBPs
Other Wuchereria bancrofti RBPs

166 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Bm1_57515 Brugia malayi Bm1_57515 I 1.000
LOAG_11791 Loa loa LOAG_11791 I 0.887
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.817
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.803
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.803
CJA05984 Caenorhabditis japonica CJA05984 I 0.789
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.775
146547 Helobdella robusta 146547 I 0.775
133388 Helobdella robusta 133388 I 0.775
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.775
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.775
cey-1 Caenorhabditis elegans F33A8.3 I 0.775
CRE01789 Caenorhabditis remanei CRE01789 I 0.775
CBN16711 Caenorhabditis brenneri CBN16711 I 0.775
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.764
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.764
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.764
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.764
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.764
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.764
CSDA Sus scrofa ENSSSCG00000000633 I 0.764
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.764
Csda Rattus norvegicus ENSRNOG00000005480 I 0.764
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.764
Csda Mus musculus ENSMUSG00000030189 I 0.764
CSDA Macaca mulatta ENSMMUG00000022469 I 0.764
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.764
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.764
YBX1 Microcebus murinus ENSMICG00000014984 I 0.764
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.764
CSDA Monodelphis domestica ENSMODG00000018248 I 0.764
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.764
Ybx1 Mus musculus ENSMUSG00000028639 I 0.764
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.764
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.764
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.764
AAA49715 Xenopus laevis AAA49715 I 0.764
AAI69704 Xenopus laevis AAI69704 I 0.764
ybx2-a Xenopus laevis AAI69706 D 0.764
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.764
AAA49716 Xenopus laevis AAA49716 I 0.764
AAH41191 Xenopus laevis AAH41191 I 0.764
AAI30161 Xenopus laevis AAI30161 I 0.764
AAI06324 Xenopus laevis AAI06324 I 0.764
AAH42217 Xenopus laevis AAH42217 I 0.764
CAA42778 Xenopus laevis CAA42778 I 0.764
P21573 Xenopus laevis P21573 I 0.764
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.764
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.764
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.764
AAI55915 Xenopus laevis AAI55915 I 0.764
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.764
csda Xenopus tropicalis ENSXETG00000016239 I 0.764
P21574 Xenopus laevis P21574 I 0.764
Q00436 Xenopus laevis Q00436 I 0.764
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.764
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.764
CSDA Pan troglodytes ENSPTRG00000004681 I 0.764
LOC100065107 Equus caballus ENSECAG00000013777 I 0.764
CSDA Homo sapiens ENSG00000060138 I 0.764
YB-1 Homo sapiens ENSG00000065978 D 0.764
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.764
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.764
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.764
LOC100067336 Equus caballus ENSECAG00000023592 I 0.764
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.764
CSDA Echinops telfairi ENSETEG00000002557 I 0.764
ybx1 Danio rerio ENSDARG00000004757 I 0.764
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.764
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.764
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.764
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.764
Csda Dipodomys ordii ENSDORG00000009103 I 0.764
CSDA Loxodonta africana ENSLAFG00000017247 I 0.764
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.764
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.764
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.764
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.764
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.764
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.764
CSDA Cavia porcellus ENSCPOG00000011329 I 0.764
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.764
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.764
ISCW005281 Ixodes scapularis ISCW005281 I 0.761
CBG02981 Caenorhabditis briggsae CBG02981 I 0.761
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.761
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.761
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.750
AAI55914 Xenopus laevis AAI55914 I 0.750
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.750
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.750
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.750
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.750
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.750
P45441 Xenopus laevis P45441 I 0.750
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.750
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.750
AAA49924 Xenopus laevis AAA49924 I 0.750
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.750
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.746
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.746
PHUM156710 Pediculus humanus PHUM156710 I 0.746
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.746
YBX2 Canis familiaris ENSCAFG00000016128 I 0.736
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.736
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.736
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.736
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.736
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.736
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.736
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.736
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.736
YBX2 Procavia capensis ENSPCAG00000008019 I 0.736
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.736
Ybx2 Mus musculus ENSMUSG00000018554 I 0.736
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.736
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.736
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.736
YBX2 Sus scrofa ENSSSCG00000017938 I 0.736
LOC100072964 Equus caballus ENSECAG00000009996 I 0.736
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.736
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.736
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.732
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.732
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.732
Minc12652 Meloidogyne incognita Minc12652 I 0.732
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.732
PHUM156720 Pediculus humanus PHUM156720 I 0.732
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.732
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.732
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.732
YBX2 Sorex araneus ENSSARG00000000488 I 0.722
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.722
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.722
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.722
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.722
YBX2 Homo sapiens ENSG00000006047 D 0.722
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.722
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.718
GF10852 Drosophila ananassae FBgn0087892 I 0.718
GI13673 Drosophila mojavensis FBgn0136428 I 0.718
GL15684 Drosophila persimilis FBgn0153288 I 0.718
GM24682 Drosophila sechellia FBgn0179545 I 0.718
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.718
GH16919 Drosophila grimshawi FBgn0124390 I 0.718
yps Drosophila melanogaster FBgn0022959 I 0.718
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.718
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.718
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.718
GJ14010 Drosophila virilis FBgn0201228 I 0.718
GD12750 Drosophila simulans FBgn0184477 I 0.718
GK16710 Drosophila willistoni FBgn0218712 I 0.718
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.718
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.718
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.718
GE20150 Drosophila yakuba FBgn0237472 I 0.718
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.708
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.708
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.708
CSDA Procavia capensis ENSPCAG00000001397 I 0.708
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.704
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.704
AGAP006108 Anopheles gambiae AGAP006108 I 0.704
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.704
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.704
AAEL001375 Aedes aegypti AAEL001375 I 0.704