cey-1 (Caenorhabditis elegans)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 F33A8.3 T17072_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.775
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.775
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.722
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.722
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.722
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
F33A8.3.1 CSD 20 90
F33A8.3.2 CSD 20 90

Links

Other CSD family RBPs
Other Caenorhabditis elegans RBPs

158 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBG02981 Caenorhabditis briggsae CBG02981 I 0.972
CRE01789 Caenorhabditis remanei CRE01789 I 0.958
CBN16711 Caenorhabditis brenneri CBN16711 I 0.958
CJA05984 Caenorhabditis japonica CJA05984 I 0.944
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.859
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.789
Bm1_57515 Brugia malayi Bm1_57515 I 0.775
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.775
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.761
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.761
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.761
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.761
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.750
CSDA Loxodonta africana ENSLAFG00000017247 I 0.750
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.750
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.750
ybx1 Danio rerio ENSDARG00000004757 I 0.750
Csda Dipodomys ordii ENSDORG00000009103 I 0.750
Q00436 Xenopus laevis Q00436 I 0.750
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.750
CSDA Monodelphis domestica ENSMODG00000018248 I 0.750
CSDA Pan troglodytes ENSPTRG00000004681 I 0.750
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.750
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.750
LOC100065107 Equus caballus ENSECAG00000013777 I 0.750
CSDA Macaca mulatta ENSMMUG00000022469 I 0.750
Csda Rattus norvegicus ENSRNOG00000005480 I 0.750
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.750
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.750
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.750
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.750
CSDA Sus scrofa ENSSSCG00000000633 I 0.750
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.750
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.750
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.750
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.750
CSDA Cavia porcellus ENSCPOG00000011329 I 0.750
P21573 Xenopus laevis P21573 I 0.750
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.750
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.750
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.750
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.750
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.750
LOC100067336 Equus caballus ENSECAG00000023592 I 0.750
YB-1 Homo sapiens ENSG00000065978 D 0.750
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.750
CSDA Homo sapiens ENSG00000060138 I 0.750
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.750
CSDA Echinops telfairi ENSETEG00000002557 I 0.750
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.750
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.750
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.750
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.750
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.750
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.750
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.750
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.750
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.750
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.750
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.750
AAI30161 Xenopus laevis AAI30161 I 0.750
AAI06324 Xenopus laevis AAI06324 I 0.750
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.750
Ybx1 Mus musculus ENSMUSG00000028639 I 0.750
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.750
YBX1 Microcebus murinus ENSMICG00000014984 I 0.750
AAH42217 Xenopus laevis AAH42217 I 0.750
AAH41191 Xenopus laevis AAH41191 I 0.750
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.750
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.750
AAA49715 Xenopus laevis AAA49715 I 0.750
Csda Mus musculus ENSMUSG00000030189 I 0.750
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.750
CAA42778 Xenopus laevis CAA42778 I 0.750
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.746
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.746
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.746
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.736
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.736
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.736
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.736
csda Xenopus tropicalis ENSXETG00000016239 I 0.736
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.736
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.736
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.736
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.736
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.736
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.732
ISCW005281 Ixodes scapularis ISCW005281 I 0.732
146547 Helobdella robusta 146547 I 0.732
PHUM156710 Pediculus humanus PHUM156710 I 0.732
133388 Helobdella robusta 133388 I 0.732
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.732
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.732
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.722
YBX2 Procavia capensis ENSPCAG00000008019 I 0.722
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.722
Ybx2 Mus musculus ENSMUSG00000018554 I 0.722
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.722
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.722
YBX2 Canis familiaris ENSCAFG00000016128 I 0.722
P21574 Xenopus laevis P21574 I 0.722
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.722
AAI69704 Xenopus laevis AAI69704 I 0.722
AAI55915 Xenopus laevis AAI55915 I 0.722
AAA49716 Xenopus laevis AAA49716 I 0.722
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.722
ybx2-a Xenopus laevis AAI69706 D 0.722
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.722
LOC100072964 Equus caballus ENSECAG00000009996 I 0.722
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.722
YBX2 Sus scrofa ENSSSCG00000017938 I 0.722
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.722
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.722
GD12750 Drosophila simulans FBgn0184477 I 0.718
GK16710 Drosophila willistoni FBgn0218712 I 0.718
GE20150 Drosophila yakuba FBgn0237472 I 0.718
GJ14010 Drosophila virilis FBgn0201228 I 0.718
GM24682 Drosophila sechellia FBgn0179545 I 0.718
GF10852 Drosophila ananassae FBgn0087892 I 0.718
yps Drosophila melanogaster FBgn0022959 I 0.718
GH16919 Drosophila grimshawi FBgn0124390 I 0.718
GI13673 Drosophila mojavensis FBgn0136428 I 0.718
GL15684 Drosophila persimilis FBgn0153288 I 0.718
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.718
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.718
PHUM156720 Pediculus humanus PHUM156720 I 0.718
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.718
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.718
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.718
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.718
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.708
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.708
YBX2 Sorex araneus ENSSARG00000000488 I 0.708
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.708
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.708
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.708
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.708
YBX2 Homo sapiens ENSG00000006047 D 0.708
P45441 Xenopus laevis P45441 I 0.708
AAI55914 Xenopus laevis AAI55914 I 0.708
AAA49924 Xenopus laevis AAA49924 I 0.708
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.708
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.708
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.708
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.708
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.708
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.704
Minc12652 Meloidogyne incognita Minc12652 I 0.704
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.704
LOAG_11791 Loa loa LOAG_11791 I 0.704
AAEL001375 Aedes aegypti AAEL001375 I 0.704
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.704
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.704
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.704
AGAP006108 Anopheles gambiae AGAP006108 I 0.704
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.704