ENSCJAG00000031891 (Callithrix jacchus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCJAG00000031891 T16793_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.831
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.831
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.792
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.792
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.792
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000044468 CSD 1 63

Links

Other CSD family RBPs
Other Callithrix jacchus RBPs

139 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.892
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.845
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.843
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.831
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.831
P21573 Xenopus laevis P21573 I 0.831
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.831
Ybx1 Mus musculus ENSMUSG00000028639 I 0.831
CAA42778 Xenopus laevis CAA42778 I 0.831
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.831
CSDA Macaca mulatta ENSMMUG00000022469 I 0.831
YBX1 Microcebus murinus ENSMICG00000014984 I 0.831
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.831
Q00436 Xenopus laevis Q00436 I 0.831
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.831
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.831
Csda Mus musculus ENSMUSG00000030189 I 0.831
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.831
AAH41191 Xenopus laevis AAH41191 I 0.831
AAH42217 Xenopus laevis AAH42217 I 0.831
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.831
AAA49715 Xenopus laevis AAA49715 I 0.831
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.831
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.831
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.831
AAI06324 Xenopus laevis AAI06324 I 0.831
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.831
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.831
Csda Rattus norvegicus ENSRNOG00000005480 I 0.831
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.831
AAI30161 Xenopus laevis AAI30161 I 0.831
CSDA Pan troglodytes ENSPTRG00000004681 I 0.831
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.831
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.831
LOC100067336 Equus caballus ENSECAG00000023592 I 0.831
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.831
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.831
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.831
CSDA Echinops telfairi ENSETEG00000002557 I 0.831
LOC100065107 Equus caballus ENSECAG00000013777 I 0.831
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.831
CSDA Cavia porcellus ENSCPOG00000011329 I 0.831
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.831
ybx1 Danio rerio ENSDARG00000004757 I 0.831
Csda Dipodomys ordii ENSDORG00000009103 I 0.831
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.831
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.831
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.831
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.831
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.831
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.831
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.831
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.831
CSDA Sus scrofa ENSSSCG00000000633 I 0.831
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.831
CSDA Loxodonta africana ENSLAFG00000017247 I 0.831
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.831
YB-1 Homo sapiens ENSG00000065978 D 0.831
CSDA Homo sapiens ENSG00000060138 I 0.831
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.831
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.831
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.831
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.817
YBX2 Sorex araneus ENSSARG00000000488 I 0.817
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.817
CSDA Monodelphis domestica ENSMODG00000018248 I 0.817
AAA49716 Xenopus laevis AAA49716 I 0.817
P21574 Xenopus laevis P21574 I 0.817
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.817
ybx2-a Xenopus laevis AAI69706 D 0.817
AAI69704 Xenopus laevis AAI69704 I 0.817
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.817
AAI55915 Xenopus laevis AAI55915 I 0.817
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.803
YBX2 Canis familiaris ENSCAFG00000016128 I 0.803
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.803
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.803
AAA49924 Xenopus laevis AAA49924 I 0.803
AAI55914 Xenopus laevis AAI55914 I 0.803
csda Xenopus tropicalis ENSXETG00000016239 I 0.803
P45441 Xenopus laevis P45441 I 0.803
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.803
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.803
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.803
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.803
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.803
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.803
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.803
Ybx2 Mus musculus ENSMUSG00000018554 I 0.803
YBX2 Sus scrofa ENSSSCG00000017938 I 0.803
LOC100072964 Equus caballus ENSECAG00000009996 I 0.803
YBX2 Procavia capensis ENSPCAG00000008019 I 0.803
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.803
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.789
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.789
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.789
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.789
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.789
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.789
YBX2 Homo sapiens ENSG00000006047 D 0.789
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.789
CSDA Procavia capensis ENSPCAG00000001397 I 0.775
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.775
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.775
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.775
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.775
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.764
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.762
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.761
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.750
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.750
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.750
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.750
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.746
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.742
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.736
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.736
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.734
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.734
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.734
YBX1 Procavia capensis ENSPCAG00000008397 I 0.734
CSDA Felis catus ENSFCAG00000018959 I 0.734
LOAG_11791 Loa loa LOAG_11791 I 0.734
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.734
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.722
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.722
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.722
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.722
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.722
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.722
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.722
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.718
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.714
YBX2 Microcebus murinus ENSMICG00000012453 I 0.714
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.714
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.712
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.712
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.708
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.703