Minc12652 (Meloidogyne incognita)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 Minc12652 T17394_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.718
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Minc12652a CSD 84 154
Minc12652b CSD 1 60

Links

Other CSD family RBPs
Other Meloidogyne incognita RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.775
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.761
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.761
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.746
CRE01789 Caenorhabditis remanei CRE01789 I 0.746
CBN16711 Caenorhabditis brenneri CBN16711 I 0.746
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.746
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.746
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.746
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.732
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.732
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.732
Bm1_57515 Brugia malayi Bm1_57515 I 0.732
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.732
CBG02981 Caenorhabditis briggsae CBG02981 I 0.732
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.732
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.722
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.722
GF10852 Drosophila ananassae FBgn0087892 I 0.718
yps Drosophila melanogaster FBgn0022959 I 0.718
AGAP006108 Anopheles gambiae AGAP006108 I 0.718
GH16919 Drosophila grimshawi FBgn0124390 I 0.718
GI13673 Drosophila mojavensis FBgn0136428 I 0.718
GL15684 Drosophila persimilis FBgn0153288 I 0.718
GM24682 Drosophila sechellia FBgn0179545 I 0.718
PHUM156720 Pediculus humanus PHUM156720 I 0.718
PHUM156710 Pediculus humanus PHUM156710 I 0.718
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.718
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.718
AAEL001375 Aedes aegypti AAEL001375 I 0.718
GE20150 Drosophila yakuba FBgn0237472 I 0.718
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.718
GJ14010 Drosophila virilis FBgn0201228 I 0.718
GK16710 Drosophila willistoni FBgn0218712 I 0.718
GD12750 Drosophila simulans FBgn0184477 I 0.718
LOAG_11791 Loa loa LOAG_11791 I 0.714
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.708
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.708
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.708
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.708
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.708
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.708
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.708
CSDA Pan troglodytes ENSPTRG00000004681 I 0.708
CSDA Monodelphis domestica ENSMODG00000018248 I 0.708
Ybx1 Mus musculus ENSMUSG00000028639 I 0.708
Csda Mus musculus ENSMUSG00000030189 I 0.708
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.708
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.708
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.708
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.708
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.708
CSDA Macaca mulatta ENSMMUG00000022469 I 0.708
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.708
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.708
Csda Rattus norvegicus ENSRNOG00000005480 I 0.708
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.708
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.708
CSDA Sus scrofa ENSSSCG00000000633 I 0.708
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.708
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.708
CSDA Loxodonta africana ENSLAFG00000017247 I 0.708
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.708
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.708
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.708
Q00436 Xenopus laevis Q00436 I 0.708
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.708
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.708
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.708
AAA49715 Xenopus laevis AAA49715 I 0.708
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.708
P21574 Xenopus laevis P21574 I 0.708
P21573 Xenopus laevis P21573 I 0.708
AAI06324 Xenopus laevis AAI06324 I 0.708
AAH42217 Xenopus laevis AAH42217 I 0.708
AAH41191 Xenopus laevis AAH41191 I 0.708
AAA49716 Xenopus laevis AAA49716 I 0.708
AAI30161 Xenopus laevis AAI30161 I 0.708
AAI55915 Xenopus laevis AAI55915 I 0.708
CAA42778 Xenopus laevis CAA42778 I 0.708
ybx2-a Xenopus laevis AAI69706 D 0.708
AAI69704 Xenopus laevis AAI69704 I 0.708
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.708
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.708
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.708
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.708
YB-1 Homo sapiens ENSG00000065978 D 0.708
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.708
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.708
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.708
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.708
YBX1 Microcebus murinus ENSMICG00000014984 I 0.708
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.708
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.708
CSDA Echinops telfairi ENSETEG00000002557 I 0.708
CSDA Homo sapiens ENSG00000060138 I 0.708
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.708
Csda Dipodomys ordii ENSDORG00000009103 I 0.708
ybx1 Danio rerio ENSDARG00000004757 I 0.708
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.708
LOC100065107 Equus caballus ENSECAG00000013777 I 0.708
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.708
LOC100067336 Equus caballus ENSECAG00000023592 I 0.708
CSDA Cavia porcellus ENSCPOG00000011329 I 0.708
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.704
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.704
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.704
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.704
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.704
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.704
cey-1 Caenorhabditis elegans F33A8.3 I 0.704
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.704
ISCW005281 Ixodes scapularis ISCW005281 I 0.704
133388 Helobdella robusta 133388 I 0.704
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.704