B9HGC1_POPTR (Populus trichocarpa)
La,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF05383 (La)
PF00076 (RRM_1) 		IPR006630
IPR000504 		POPTR_0007s00450 T23504_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s00450.1 La 192 251
POPTR_0007s00450.1 RRM 282 321
POPTR_0007s00450.1 RRM 328 362
POPTR_0007s00450.2 La 192 251
POPTR_0007s00450.2 RRM 282 321
POPTR_0007s00450.2 RRM 328 362
POPTR_0007s00450.3 La 192 251
POPTR_0007s00450.3 RRM 282 321
POPTR_0007s00450.3 RRM 328 362

Links

Other La,RRM family RBPs
Other Populus trichocarpa RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30042.m000490 Ricinus communis 30042.m000490 N 0.912
AT2G43970 Arabidopsis thaliana AT2G43970-TAIR-G N 0.745
B9IJ52_POPTR Populus trichocarpa POPTR_0017s04020 N 0.941
cassava38201.valid.m1 Manihot esculenta cassava38201.valid.m1 N 0.887
chr1.CM0105.1300.nc Lotus japonicus chr1.CM0105.1300.nc N 0.819
Cucsa.151410 Cucumis sativus Cucsa.151410 N 0.841
Glyma03g42540.1 Glycine max Glyma03g42540.1 N 0.812
Glyma19g45320.1 Glycine max Glyma19g45320.1 N 0.819
GSVIVG00038251001 Vitis vinifera GSVIVG00038251001 N 0.793
MDP0000319338 Malus x domestica MDP0000319338 N 0.822
PK11097.1 Cannabis sativa PK11097.1 N 0.816
ppa005181m Prunus persica ppa005181m N 0.822
XM_002881897.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002119 N 0.754