CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TRV_07199
(
Trichophyton verrucosum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
TRV_07199
T31245_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TRV_07199
RRM
109
188
VYVIGLNPTIRDENLLLQTLRGDQYFGQYGDIDKIVLSKAKPGGNPNQGIGVYVTFARKIDAATCIAAVDGSPNGDRVLR
Links
Other
RRM
family RBPs
Other
Trichophyton verrucosum
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_083590
Aspergillus clavatus
CADACLAG00008130
N
0.840
AFLA_128590
Aspergillus flavus
CADAFLAG00009917
N
0.825
AFUA_6G08820
Aspergillus fumigatus
CADAFUAG00001582
N
0.840
An11g06210
Aspergillus niger
CADANGAG00008954
N
0.852
ANIA_10228
Aspergillus nidulans
CADANIAG00008371
N
0.827
AO090001000554
Aspergillus oryzae
CADAORAG00000508
N
0.825
ARB_01970
Arthroderma benhamiae
ARB_01970
N
0.753
ATEG_06631
Aspergillus terreus
CADATEAG00009109
N
0.852
BDBG_02075
Blastomyces dermatitidis
BDBG_02075
N
0.914
CIMG_01358
Coccidioides immitis
CIMG_01358
N
0.864
CPSG_01825
Coccidioides posadasii
CPSG_01825
N
0.887
fgenesh1_pg.00118_#_293
Aspergillus carbonarius
fgenesh1_pg.00118_#_293
N
0.875
HCAG_05763
Histoplasma capsulatum
HCAG_05763
N
0.914
MCYG_00552
Microsporum canis
MCYG_00552
N
0.753
MGYG_01410
Microsporum gypseum
MGYG_01410
N
0.753
NFIA_054470
Neosartorya fischeri
CADNFIAG00005274
N
0.840
PABG_01879
Paracoccidioides brasiliensis
PABG_01879
N
0.938
Pc12g08810
Penicillium chrysogenum
Pc12g08810
N
0.827
PMAA_064610
Penicillium marneffei
PMAA_064610
N
0.840
TEQG_06760
Trichophyton equinum
TEQG_06760
N
0.753
TERG_00095
Trichophyton rubrum
TERG_00095
N
0.753
TESG_08570
Trichophyton tonsurans
TESG_08570
N
0.753
UREG_01281
Uncinocarpus reesii
UREG_01281
N
0.900