CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CIMG_01358
(
Coccidioides immitis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CIMG_01358
T28650_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CIMG_01358T0
RRM
123
202
VYVIGLNPTIRDENQLLQTLRGDQYFGQYGEIEKIVVSKAKPGGNPNQGIGVYVTFAKKSDAASCIAAVDGSANGDRVLR
CIMG_01358T1
RRM
123
202
VYVIGLNPTIRDENQLLQTLRGDQYFGQYGEIEKIVVSKAKPGGNPNQGIGVYVTFAKKSDAASCIAAVDGSANGDRVLR
CIMG_01358T2
RRM
123
202
VYVIGLNPTIRDENQLLQTLRGDQYFGQYGEIEKIVVSKAKPGGNPNQGIGVYVTFAKKSDAASCIAAVDGSANGDRVLR
Links
Other
RRM
family RBPs
Other
Coccidioides immitis
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
UREG_01281
Uncinocarpus reesii
UREG_01281
N
0.951
CPSG_01825
Coccidioides posadasii
CPSG_01825
N
0.951
HCAG_05763
Histoplasma capsulatum
HCAG_05763
N
0.925
BDBG_02075
Blastomyces dermatitidis
BDBG_02075
N
0.925
ANIA_10228
Aspergillus nidulans
CADANIAG00008371
N
0.912
ACLA_083590
Aspergillus clavatus
CADACLAG00008130
N
0.912
An11g06210
Aspergillus niger
CADANGAG00008954
N
0.900
NFIA_054470
Neosartorya fischeri
CADNFIAG00005274
N
0.900
Pc12g08810
Penicillium chrysogenum
Pc12g08810
N
0.900
AFUA_6G08820
Aspergillus fumigatus
CADAFUAG00001582
N
0.900
PABG_01879
Paracoccidioides brasiliensis
PABG_01879
N
0.889
PMAA_064610
Penicillium marneffei
PMAA_064610
N
0.887
ATEG_06631
Aspergillus terreus
CADATEAG00009109
N
0.875
AFLA_128590
Aspergillus flavus
CADAFLAG00009917
N
0.864
AO090001000554
Aspergillus oryzae
CADAORAG00000508
N
0.864
TRV_07199
Trichophyton verrucosum
TRV_07199
N
0.864
fgenesh1_pg.00118_#_293
Aspergillus carbonarius
fgenesh1_pg.00118_#_293
N
0.852
MCYG_00552
Microsporum canis
MCYG_00552
N
0.750
ARB_01970
Arthroderma benhamiae
ARB_01970
N
0.750
MGYG_01410
Microsporum gypseum
MGYG_01410
N
0.750
TESG_08570
Trichophyton tonsurans
TESG_08570
N
0.750
TEQG_06760
Trichophyton equinum
TEQG_06760
N
0.750
TERG_00095
Trichophyton rubrum
TERG_00095
N
0.750