CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AO090001000554
(
Aspergillus oryzae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADAORAG00000508
T33658_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAORAP00000497
RRM
76
155
VYVIGLNPTIRDESQLLQTLRGRDYFGQYGEIEKIVVSKAKPGGNPNQGIGVYVTYSKKSDAATCISSVDGSVNGDRVLR
Links
Other
RRM
family RBPs
Other
Aspergillus oryzae
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFLA_128590
Aspergillus flavus
CADAFLAG00009917
N
1.000
ANIA_10228
Aspergillus nidulans
CADANIAG00008371
N
0.889
ACLA_083590
Aspergillus clavatus
CADACLAG00008130
N
0.889
UREG_01281
Uncinocarpus reesii
UREG_01281
N
0.887
NFIA_054470
Neosartorya fischeri
CADNFIAG00005274
N
0.877
AFUA_6G08820
Aspergillus fumigatus
CADAFUAG00001582
N
0.877
CPSG_01825
Coccidioides posadasii
CPSG_01825
N
0.875
fgenesh1_pg.00118_#_293
Aspergillus carbonarius
fgenesh1_pg.00118_#_293
N
0.875
CIMG_01358
Coccidioides immitis
CIMG_01358
N
0.864
Pc12g08810
Penicillium chrysogenum
Pc12g08810
N
0.864
An11g06210
Aspergillus niger
CADANGAG00008954
N
0.864
ATEG_06631
Aspergillus terreus
CADATEAG00009109
N
0.864
PABG_01879
Paracoccidioides brasiliensis
PABG_01879
N
0.850
HCAG_05763
Histoplasma capsulatum
HCAG_05763
N
0.840
BDBG_02075
Blastomyces dermatitidis
BDBG_02075
N
0.840
PMAA_064610
Penicillium marneffei
PMAA_064610
N
0.827
TRV_07199
Trichophyton verrucosum
TRV_07199
N
0.825