CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPSG_01825
(
Coccidioides posadasii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CPSG_01825
T29047_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPSG_01825T0
RRM
123
202
VYVIGLNPTIRDENQLLQTLRGDQYFGQYGEIEKIVVSKAKPSGNPNQGIGVYVTFAKKSDAASCIAAVDGSANGDRVLR
Links
Other
RRM
family RBPs
Other
Coccidioides posadasii
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
UREG_01281
Uncinocarpus reesii
UREG_01281
N
0.963
CIMG_01358
Coccidioides immitis
CIMG_01358
N
0.951
PABG_01879
Paracoccidioides brasiliensis
PABG_01879
N
0.912
BDBG_02075
Blastomyces dermatitidis
BDBG_02075
N
0.889
HCAG_05763
Histoplasma capsulatum
HCAG_05763
N
0.889
TRV_07199
Trichophyton verrucosum
TRV_07199
N
0.887
ANIA_10228
Aspergillus nidulans
CADANIAG00008371
N
0.877
fgenesh1_pg.00118_#_293
Aspergillus carbonarius
fgenesh1_pg.00118_#_293
N
0.875
AFLA_128590
Aspergillus flavus
CADAFLAG00009917
N
0.875
AO090001000554
Aspergillus oryzae
CADAORAG00000508
N
0.875
NFIA_054470
Neosartorya fischeri
CADNFIAG00005274
N
0.864
AFUA_6G08820
Aspergillus fumigatus
CADAFUAG00001582
N
0.864
ACLA_083590
Aspergillus clavatus
CADACLAG00008130
N
0.864
Pc12g08810
Penicillium chrysogenum
Pc12g08810
N
0.852
PMAA_064610
Penicillium marneffei
PMAA_064610
N
0.852
An11g06210
Aspergillus niger
CADANGAG00008954
N
0.852
ATEG_06631
Aspergillus terreus
CADATEAG00009109
N
0.840
MCYG_00552
Microsporum canis
MCYG_00552
N
0.708
ARB_01970
Arthroderma benhamiae
ARB_01970
N
0.708
MGYG_01410
Microsporum gypseum
MGYG_01410
N
0.708
TEQG_06760
Trichophyton equinum
TEQG_06760
N
0.708
TESG_08570
Trichophyton tonsurans
TESG_08570
N
0.708
TERG_00095
Trichophyton rubrum
TERG_00095
N
0.708