CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ANIA_10228
(
Aspergillus nidulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADANIAG00008371
T33649_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANIAP00008371
RRM
113
192
VYVIGLNPTIRDESQLLQTLRGKDYFGQYGEIEKIVVSKAKPGGNPNQGIGVYVTYAKKSDAATCIAAVDGSGNGDRILR
Links
Other
RRM
family RBPs
Other
Aspergillus nidulans
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NFIA_054470
Neosartorya fischeri
CADNFIAG00005274
N
0.950
AFUA_6G08820
Aspergillus fumigatus
CADAFUAG00001582
N
0.950
ACLA_083590
Aspergillus clavatus
CADACLAG00008130
N
0.925
ATEG_06631
Aspergillus terreus
CADATEAG00009109
N
0.925
CIMG_01358
Coccidioides immitis
CIMG_01358
N
0.912
BDBG_02075
Blastomyces dermatitidis
BDBG_02075
N
0.900
HCAG_05763
Histoplasma capsulatum
HCAG_05763
N
0.900
An11g06210
Aspergillus niger
CADANGAG00008954
N
0.900
AFLA_128590
Aspergillus flavus
CADAFLAG00009917
N
0.889
AO090001000554
Aspergillus oryzae
CADAORAG00000508
N
0.889
CPSG_01825
Coccidioides posadasii
CPSG_01825
N
0.877
UREG_01281
Uncinocarpus reesii
UREG_01281
N
0.877
Pc12g08810
Penicillium chrysogenum
Pc12g08810
N
0.875
fgenesh1_pg.00118_#_293
Aspergillus carbonarius
fgenesh1_pg.00118_#_293
N
0.864
PMAA_064610
Penicillium marneffei
PMAA_064610
N
0.863
PABG_01879
Paracoccidioides brasiliensis
PABG_01879
N
0.852
TRV_07199
Trichophyton verrucosum
TRV_07199
N
0.827
MCYG_00552
Microsporum canis
MCYG_00552
N
0.705
ARB_01970
Arthroderma benhamiae
ARB_01970
N
0.705
MGYG_01410
Microsporum gypseum
MGYG_01410
N
0.705
TEQG_06760
Trichophyton equinum
TEQG_06760
N
0.705
TERG_00095
Trichophyton rubrum
TERG_00095
N
0.705
TESG_08570
Trichophyton tonsurans
TESG_08570
N
0.705