CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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WUBG_03274
(
Wuchereria bancrofti
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
WUBG_03274
T31510_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
WUBG_03274T0
RRM
9
75
VYIGNLPPDIRQRDLEDLFYKYGHINFIDVKLTRGAPFAFIEFDDPRDARDAIRGRDGYELDGCRIR
WUBG_03274T0
RRM
118
181
VLVTGLPVTGSWQDLKDHMREAGDICYADVFKDGTGVVEYTRQDDMKYAIKKLDDTKFKSHEGE
Links
Other
RRM
family RBPs
Other
Wuchereria bancrofti
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
97475
Helobdella robusta
97475
N
0.725
AAH42354
Xenopus laevis
AAH42354
I
0.705
AAI23123
Xenopus laevis
AAI23123
I
0.705
AAI28932
Xenopus laevis
AAI28932
I
0.705
amel4_ncbi_hmm5595
Apis mellifera
amel4_ncbi_hmm5595
I
0.725
BGIBMGA013096
Bombyx mori
BGIBMGA013096
I
0.702
Bm1_45780
Brugia malayi
Bm1_45780
N
0.802
Bm1_45785
Brugia malayi
Bm1_45785
N
1.000
CBG03563
Caenorhabditis briggsae
CBG03563
I
0.740
CBN06053
Caenorhabditis brenneri
CBN06053
I
0.718
CPIJ008786
Culex quinquefasciatus
CPIJ008786
I
0.702
CpipJ_CPIJ008786
Culex pipiens
CpipJ_CPIJ008786
I
0.702
CRE13382
Caenorhabditis remanei
CRE13382
I
0.718
DGIL_AUG5s14011g9t1
Acyrtosiphon pisum
DGIL_AUG5s14011g9t1
I
0.718
ENSCSAVG00000006093
Ciona savignyi
ENSCSAVG00000006093
I
0.718
ENSTNIG00000016223
Tetraodon nigroviridis
ENSTNIG00000016223
I
0.712
ENSTRUG00000003691
Takifugu rubripes
ENSTRUG00000003691
I
0.712
e_gw.425.15.1
Branchiostoma floridae
e_gw.425.15.1
I
0.705
e_gw1.83.149.1
Daphnia pulex
e_gw1.83.149.1
I
0.725
fgenesh2_pg.scaffold_118000083
Branchiostoma floridae
fgenesh2_pg.scaffold_118000083
I
0.720
ISCW014398
Ixodes scapularis
ISCW014398
I
0.740
LOAG_04332
Loa loa
LOAG_04332
N
0.786
LOAG_04334
Loa loa
LOAG_04334
N
1.000
Minc04015
Meloidogyne incognita
Minc04015
I
0.737
Minc06188
Meloidogyne incognita
Minc06188
I
0.737
nasonia_NCBI_hmm519234
Nasonia vitripennis
nasonia_NCBI_hmm519234
I
0.718
Ppa-rsp-3
Pristionchus pacificus
PPA25378
I
0.735
srsf1
Xenopus tropicalis
ENSXETG00000008954
I
0.705
SRSF1
Anolis carolinensis
ENSACAG00000005542
I
0.705