BGIBMGA013096 (Bombyx mori)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIBMGA013096 T55051_0.6 SilkDB (2008-Apr-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SF2
M064_0.6 		Drosophila melanogaster DGGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00066 		0.842
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.789
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.789
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.789
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.789
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.789
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.789
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.789
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.789
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.789
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.789
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.707
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.707
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BGIBMGA013096 RRM 14 80
BGIBMGA013096 RRM 120 183

Links

Other RRM family RBPs
Other Bombyx mori RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GL22249 Drosophila persimilis FBgn0159841 I 0.947
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.947
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.939
GK13511 Drosophila willistoni FBgn0215519 I 0.939
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.939
GE26323 Drosophila yakuba FBgn0243353 I 0.939
GF16525 Drosophila ananassae FBgn0093546 I 0.939
GH18077 Drosophila grimshawi FBgn0125545 I 0.939
AAEL006473 Aedes aegypti AAEL006473 I 0.924
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.916
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.916
AGAP010496 Anopheles gambiae AGAP010496 I 0.908
ISCW014398 Ixodes scapularis ISCW014398 I 0.908
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.901
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.878
GM15444 Drosophila sechellia FBgn0170362 I 0.842
GG20059 Drosophila erecta FBgn0112258 I 0.842
GI24651 Drosophila mojavensis FBgn0147373 I 0.842
SF2 Drosophila melanogaster FBgn0040284 D 0.842
GJ23504 Drosophila virilis FBgn0210602 I 0.842
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.818
srsf1a Danio rerio ENSDARG00000057691 I 0.803
AAI23123 Xenopus laevis AAI23123 I 0.803
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.803
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.803
AAI28932 Xenopus laevis AAI28932 I 0.803
AAH42354 Xenopus laevis AAH42354 I 0.803
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.795
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.795
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.795
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.795
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.795
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.795
SRSF1 Homo sapiens ENSG00000136450 D 0.795
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.795
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.795
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.795
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.795
Srsf1 Mus musculus ENSMUSG00000018379 I 0.795
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.795
LOC100056763 Equus caballus ENSECAG00000016654 I 0.795
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.795
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.795
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.795
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.788
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.788
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.788
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.788
SRSF1 Sorex araneus ENSSARG00000010949 I 0.780
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.780
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.780
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.780
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.780
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.780
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.780
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.780
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.780
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.780
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.780
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.773
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.773
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.769
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.765
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.765
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.765
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.758
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.758
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.750
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.744
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.729
Smp_185230 Schistosoma mansoni Smp_185230 I 0.729
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.727
186029 Helobdella robusta 186029 I 0.727
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.727
Minc06188 Meloidogyne incognita Minc06188 I 0.722
Minc04015 Meloidogyne incognita Minc04015 I 0.722
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.722
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.720
LOAG_10275 Loa loa LOAG_10275 I 0.718
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.710
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.707
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.707
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.707
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.707
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.707
SRSF9 Homo sapiens ENSG00000111786 D 0.707
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.707
Srsf9 Mus musculus ENSMUSG00000029538 I 0.707
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.707
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.707
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.707
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.707
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.707
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.707
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.707
Bm1_45785 Brugia malayi Bm1_45785 N 0.702
WUBG_03274 Wuchereria bancrofti WUBG_03274 N 0.702
LOAG_04334 Loa loa LOAG_04334 N 0.702
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.702