e_gw1.83.149.1 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.83.149.1 T50130_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.820
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.820
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.820
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.820
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.820
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.820
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.820
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.820
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.820
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.820
SF2
M064_0.6 		Drosophila melanogaster DGGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00066 		0.788
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.737
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.737
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.737
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.83.149.1 RRM 11 77
e_gw1.83.149.1 RRM 127 190

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ISCW014398 Ixodes scapularis ISCW014398 I 0.924
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.908
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.901
GL22249 Drosophila persimilis FBgn0159841 I 0.885
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.885
GK13511 Drosophila willistoni FBgn0215519 I 0.878
GH18077 Drosophila grimshawi FBgn0125545 I 0.878
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.878
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.878
AAEL006473 Aedes aegypti AAEL006473 I 0.878
GE26323 Drosophila yakuba FBgn0243353 I 0.878
GF16525 Drosophila ananassae FBgn0093546 I 0.878
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.870
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.870
AGAP010496 Anopheles gambiae AGAP010496 I 0.863
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.841
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.826
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.826
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.826
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.826
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.826
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.826
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.826
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.826
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.826
SRSF1 Homo sapiens ENSG00000136450 D 0.826
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.826
Srsf1 Mus musculus ENSMUSG00000018379 I 0.826
LOC100056763 Equus caballus ENSECAG00000016654 I 0.826
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.826
srsf1a Danio rerio ENSDARG00000057691 I 0.826
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.826
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.826
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.826
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.826
AAH42354 Xenopus laevis AAH42354 I 0.818
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.818
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.818
AAI28932 Xenopus laevis AAI28932 I 0.818
AAI23123 Xenopus laevis AAI23123 I 0.818
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.811
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.811
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.811
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.811
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.811
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.811
SRSF1 Sorex araneus ENSSARG00000010949 I 0.811
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.811
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.811
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.811
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.803
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.795
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.795
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.795
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.795
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.789
Smp_185230 Schistosoma mansoni Smp_185230 I 0.789
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.788
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.788
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.788
GM15444 Drosophila sechellia FBgn0170362 I 0.788
GI24651 Drosophila mojavensis FBgn0147373 I 0.788
GG20059 Drosophila erecta FBgn0112258 I 0.788
SF2 Drosophila melanogaster FBgn0040284 D 0.788
GJ23504 Drosophila virilis FBgn0210602 I 0.788
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.784
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.780
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.780
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.767
186029 Helobdella robusta 186029 I 0.765
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.758
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.758
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.758
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.756
Minc06188 Meloidogyne incognita Minc06188 I 0.752
Minc04015 Meloidogyne incognita Minc04015 I 0.752
LOAG_10275 Loa loa LOAG_10275 I 0.748
CRE13382 Caenorhabditis remanei CRE13382 I 0.748
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.748
CBG03563 Caenorhabditis briggsae CBG03563 I 0.748
CBN06053 Caenorhabditis brenneri CBN06053 I 0.748
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.744
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.742
97475 Helobdella robusta 97475 N 0.740
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.740
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.737
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.737
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.737
SRSF9 Homo sapiens ENSG00000111786 D 0.737
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.737
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.737
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.737
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.737
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.737
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.737
Srsf9 Mus musculus ENSMUSG00000029538 I 0.737
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.737
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.737
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.737
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.737
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.729
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.729
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.729
Bm1_45785 Brugia malayi Bm1_45785 N 0.725
CJA01159 Caenorhabditis japonica CJA01159 I 0.725
WUBG_03274 Wuchereria bancrofti WUBG_03274 N 0.725
LOAG_04334 Loa loa LOAG_04334 N 0.725
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.722
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.709
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.701