ISCW014398 (Ixodes scapularis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ISCW014398 T44864_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.842
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.842
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.842
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.842
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.842
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.842
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.842
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.842
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.842
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.842
SF2
M064_0.6 		Drosophila melanogaster DGGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00066 		0.781
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.759
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.759
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW014398-PA RRM 10 76
ISCW014398-PA RRM 107 170

Links

Other RRM family RBPs
Other Ixodes scapularis RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.939
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.939
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.924
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.908
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.901
AAEL006473 Aedes aegypti AAEL006473 I 0.885
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.879
GL22249 Drosophila persimilis FBgn0159841 I 0.878
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.878
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.878
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.878
GK13511 Drosophila willistoni FBgn0215519 I 0.870
GE26323 Drosophila yakuba FBgn0243353 I 0.870
GH18077 Drosophila grimshawi FBgn0125545 I 0.870
AGAP010496 Anopheles gambiae AGAP010496 I 0.870
GF16525 Drosophila ananassae FBgn0093546 I 0.870
srsf1a Danio rerio ENSDARG00000057691 I 0.856
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.856
AAI23123 Xenopus laevis AAI23123 I 0.856
AAI28932 Xenopus laevis AAI28932 I 0.856
AAH42354 Xenopus laevis AAH42354 I 0.856
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.856
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.848
Srsf1 Mus musculus ENSMUSG00000018379 I 0.848
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.848
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.848
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.848
SRSF1 Homo sapiens ENSG00000136450 D 0.848
LOC100056763 Equus caballus ENSECAG00000016654 I 0.848
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.848
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.848
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.848
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.848
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.848
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.848
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.848
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.848
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.848
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.848
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.841
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.841
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.833
SRSF1 Sorex araneus ENSSARG00000010949 I 0.833
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.833
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.833
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.833
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.833
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.833
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.833
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.833
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.826
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.826
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.826
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.826
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.818
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.818
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.811
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.811
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.806
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.803
186029 Helobdella robusta 186029 I 0.803
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.789
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.788
GI24651 Drosophila mojavensis FBgn0147373 I 0.781
SF2 Drosophila melanogaster FBgn0040284 D 0.781
GJ23504 Drosophila virilis FBgn0210602 I 0.781
GG20059 Drosophila erecta FBgn0112258 I 0.781
GM15444 Drosophila sechellia FBgn0170362 I 0.781
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.780
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.780
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.780
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.773
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.767
Smp_185230 Schistosoma mansoni Smp_185230 I 0.767
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.763
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.759
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.759
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.759
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.759
Minc04015 Meloidogyne incognita Minc04015 I 0.759
SRSF9 Homo sapiens ENSG00000111786 D 0.759
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.759
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.759
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.759
Srsf9 Mus musculus ENSMUSG00000029538 I 0.759
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.759
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.759
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.759
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.759
Minc06188 Meloidogyne incognita Minc06188 I 0.759
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.759
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.759
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.756
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.752
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.752
LOAG_10275 Loa loa LOAG_10275 I 0.748
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.746
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.744
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.744
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.744
Bm1_45785 Brugia malayi Bm1_45785 N 0.740
97475 Helobdella robusta 97475 N 0.740
CBN06053 Caenorhabditis brenneri CBN06053 I 0.740
CRE13382 Caenorhabditis remanei CRE13382 I 0.740
LOAG_04334 Loa loa LOAG_04334 N 0.740
WUBG_03274 Wuchereria bancrofti WUBG_03274 N 0.740
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.733
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.731
CBG03563 Caenorhabditis briggsae CBG03563 I 0.725
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.720
CJA01159 Caenorhabditis japonica CJA01159 I 0.718
SRSF1 Dasypus novemcinctus ENSDNOG00000011737 I 0.701
SRSF1 Felis catus ENSFCAG00000002250 I 0.701