Ppa-rsp-3 (Pristionchus pacificus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PPA25378 T45839_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.782
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.782
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.782
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.782
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.782
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.782
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.782
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.782
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.782
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.782
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PPA25378 RRM 7 73
PPA25378 RRM 131 194

Links

Other RRM family RBPs
Other Pristionchus pacificus RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.795
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.795
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.795
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.795
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.795
LOC100056763 Equus caballus ENSECAG00000016654 I 0.795
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.795
SRSF1 Homo sapiens ENSG00000136450 D 0.795
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.795
Srsf1 Mus musculus ENSMUSG00000018379 I 0.795
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.795
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.795
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.795
srsf1a Danio rerio ENSDARG00000057691 I 0.795
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.795
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.795
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.795
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.795
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.795
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.788
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.788
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.788
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.788
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.788
AAI23123 Xenopus laevis AAI23123 I 0.788
AAI28932 Xenopus laevis AAI28932 I 0.788
AAH42354 Xenopus laevis AAH42354 I 0.788
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.780
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.780
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.780
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.780
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.780
ISCW014398 Ixodes scapularis ISCW014398 I 0.780
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.780
SRSF1 Sorex araneus ENSSARG00000010949 I 0.780
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.780
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.780
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.780
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.780
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.780
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.780
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.773
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.769
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.765
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.765
CRE13382 Caenorhabditis remanei CRE13382 I 0.765
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.765
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.765
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.758
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.758
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.758
CBN06053 Caenorhabditis brenneri CBN06053 I 0.758
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.752
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.750
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.750
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.750
AAEL006473 Aedes aegypti AAEL006473 I 0.750
GL22249 Drosophila persimilis FBgn0159841 I 0.742
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.742
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.742
CJA01159 Caenorhabditis japonica CJA01159 I 0.742
CBG03563 Caenorhabditis briggsae CBG03563 I 0.742
186029 Helobdella robusta 186029 I 0.742
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.742
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.742
Smp_185230 Schistosoma mansoni Smp_185230 I 0.737
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.737
GF16525 Drosophila ananassae FBgn0093546 I 0.735
AGAP010496 Anopheles gambiae AGAP010496 I 0.735
GH18077 Drosophila grimshawi FBgn0125545 I 0.735
GK13511 Drosophila willistoni FBgn0215519 I 0.735
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.735
LOAG_04334 Loa loa LOAG_04334 N 0.735
GE26323 Drosophila yakuba FBgn0243353 I 0.735
Bm1_45785 Brugia malayi Bm1_45785 N 0.735
WUBG_03274 Wuchereria bancrofti WUBG_03274 N 0.735
Minc06188 Meloidogyne incognita Minc06188 I 0.729
Minc04015 Meloidogyne incognita Minc04015 I 0.729
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.729
LOAG_10275 Loa loa LOAG_10275 I 0.727
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.727
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.720
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.712
97475 Helobdella robusta 97475 N 0.705