CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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At-SR34a
(
Arabidopsis thaliana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AT3G49430-TAIR-G
T32755_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G49430.1-P
RRM
9
76
IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGYNLDGCRLR
AT3G49430.1-P
RRM
124
187
VIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLDDTEFRNP
AT3G49430.2-P
RRM
9
76
IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGYNLDGCRLR
AT3G49430.2-P
RRM
124
187
VIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLDDTEFRNP
Links
Other
RRM
family RBPs
Other
Arabidopsis thaliana
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29827.m002610
Ricinus communis
29827.m002610
N
0.894
29986.m001610
Ricinus communis
29986.m001610
N
0.733
30128.m008840
Ricinus communis
30128.m008840
N
0.741
At-SR30
Arabidopsis thaliana
AT1G09140-TAIR-G
N
0.776
B9GSA0_POPTR
Populus trichocarpa
POPTR_0002s20650
N
0.733
B9I218_POPTR
Populus trichocarpa
POPTR_0012s02870
N
0.856
B9I7H7_POPTR
Populus trichocarpa
POPTR_0013s01700
N
0.770
B9I9S0_POPTR
Populus trichocarpa
POPTR_0014s12440
N
0.748
B9IDH4_POPTR
Populus trichocarpa
POPTR_0015s00690
N
0.894
B9N4J4_POPTR
Populus trichocarpa
POPTR_0005s02450
N
0.741
BGIOSIBCE001550
Oryza indica
BGIOSIBCE001550
N
0.748
BGIOSIBCE011068
Oryza indica
BGIOSIBCE011068
N
0.785
BGIOSIBCE018731
Oryza indica
BGIOSIBCE018731
N
0.748
BRADI1G18070
Brachypodium distachyon
BRADI1G18070
N
0.807
BRADI1G62780
Brachypodium distachyon
BRADI1G62780
N
0.793
BRADI2G11990
Brachypodium distachyon
BRADI2G11990
N
0.770
cassava1173.valid.m1
Manihot esculenta
cassava1173.valid.m1
N
0.741
cassava1174.valid.m1
Manihot esculenta
cassava1174.valid.m1
N
0.741
cassava17474.valid.m1
Manihot esculenta
cassava17474.valid.m1
N
0.871
cassava17475.valid.m1
Manihot esculenta
cassava17475.valid.m1
N
0.871
cassava22829.valid.m1
Manihot esculenta
cassava22829.valid.m1
N
0.741
cassava24706.valid.m1
Manihot esculenta
cassava24706.valid.m1
N
0.733
cassava24707.valid.m1
Manihot esculenta
cassava24707.valid.m1
N
0.733
cassava4046.m1
Manihot esculenta
cassava4046.m1
N
0.741
cassava4047.m1
Manihot esculenta
cassava4047.m1
N
0.741
cassava4048.m1
Manihot esculenta
cassava4048.m1
N
0.741
cassava4049.m1
Manihot esculenta
cassava4049.m1
N
0.741
cassava4050.m1
Manihot esculenta
cassava4050.m1
N
0.741
chr2.CM0249.1120.nc
Lotus japonicus
chr2.CM0249.1120.nc
N
0.909
chr5.CM0299.260.nc
Lotus japonicus
chr5.CM0299.260.nc
N
0.741
Cucsa.181840
Cucumis sativus
Cucsa.181840
N
0.785
Cucsa.205570
Cucumis sativus
Cucsa.205570
N
0.756
estExt_Genewise1.C_280136
Physcomitrella patens
estExt_Genewise1.C_280136
N
0.813
e_gw1.173.63.1
Physcomitrella patens
e_gw1.173.63.1
N
0.827
e_gw1.19.485.1
Selaginella moellendorfii
e_gw1.19.485.1
N
0.782
e_gw1.7.233.1
Physcomitrella patens
e_gw1.7.233.1
N
0.813
Glyma03g37240.1
Glycine max
Glyma03g37240.1
N
0.748
Glyma04g40740.1
Glycine max
Glyma04g40740.1
N
0.902
Glyma06g14060.1
Glycine max
Glyma06g14060.1
N
0.902
Glyma19g39850.1
Glycine max
Glyma19g39850.1
N
0.748
Glyma20g38060.1
Glycine max
Glyma20g38060.1
N
0.756
GRMZM2G170365
Zea mays
GRMZM2G170365
N
0.741
GRMZM2G331811
Zea mays
GRMZM2G331811
N
0.763
GRMZM2G436092
Zea mays
GRMZM2G436092
N
0.806
GSVIVG00027997001
Vitis vinifera
GSVIVG00027997001
N
0.756
GSVIVG00031132001
Vitis vinifera
GSVIVG00031132001
N
0.748
GSVIVG00038636001
Vitis vinifera
GSVIVG00038636001
N
0.886
gw1.41.236.1
Selaginella moellendorfii
gw1.41.236.1
N
0.782
LjT41H24.70.nd
Lotus japonicus
LjT41H24.70.nd
N
0.712
LOC_Os03g22380
Oryza sativa
LOC_Os03g22380
N
0.785
LOC_Os05g30140
Oryza sativa
LOC_Os05g30140
N
0.748
LOC_Os07g47630
Oryza sativa
LOC_Os07g47630
N
0.778
MDP0000200391
Malus x domestica
MDP0000200391
N
0.879
MDP0000231034
Malus x domestica
MDP0000231034
N
0.726
MDP0000268577
Malus x domestica
MDP0000268577
N
0.879
MDP0000271362
Malus x domestica
MDP0000271362
N
0.719
MDP0000857322
Malus x domestica
MDP0000857322
N
0.871
Medtr1g099910
Medicago truncatula
Medtr1g099910
N
0.711
Medtr3g122850
Medicago truncatula
Medtr3g122850
N
0.894
Medtr8g068270
Medicago truncatula
Medtr8g068270
N
0.756
mgf000052m
Mimulus guttatus
mgf000052m
N
0.894
mgf011321m
Mimulus guttatus
mgf011321m
N
0.894
mgf014175m
Mimulus guttatus
mgf014175m
N
0.894
PDK_20s1395611g001
Phoenix dactylifera
PDK_20s1395611g001
N
0.707
PK08657.1
Cannabis sativa
PK08657.1
N
0.909
ppa009033m
Prunus persica
ppa009033m
N
0.741
ppa009045m
Prunus persica
ppa009045m
N
0.741
ppa009360m
Prunus persica
ppa009360m
N
0.748
ppa009968m
Prunus persica
ppa009968m
N
0.748
ppa017674m
Prunus persica
ppa017674m
N
0.886
SB01G035680
Sorghum bicolor
Sb01g035680
N
0.821
SB03G013010
Sorghum bicolor
Sb03g013010
N
0.763
Sb09g018110
Sorghum bicolor
Sb09g018110
N
0.733
SR34
Arabidopsis thaliana
AT1G02840-TAIR-G
N
0.746
XM_002874870.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002776
N
0.733
XM_002875918.1
Arabidopsis lyrata
scaffold_501926.1
N
0.985
XM_002889376.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1000165
N
0.741
XM_002892438.1
Arabidopsis lyrata
fgenesh2_kg.1__949__AT1G09140.1
N
0.778