An12g00410 (Aspergillus niger)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CADANGAG00009490 T33567_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
CADANGAP00009311 RRM 68 135
CADANGAP00009311 RRM 162 233
CADANGAP00009311 RRM 289 353

Links

Other RRM family RBPs
Other Aspergillus niger RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACLA_065300 Aspergillus clavatus CADACLAG00006222 N 0.985
AFLA_071390 Aspergillus flavus CADAFLAG00008563 N 0.985
AFUA_7G02230 Aspergillus fumigatus CADAFUAG00001190 N 0.980
ANIA_09090 Aspergillus nidulans CADANIAG00009524 N 0.995
AO090038000602 Aspergillus oryzae CADAORAG00009349 N 0.990
ARB_04665 Arthroderma benhamiae ARB_04665 N 0.937
BC1G_12954 Botrytis cinerea BC1G_12954 N 0.917
BDBG_04017 Blastomyces dermatitidis BDBG_04017 N 0.956
CIMG_07756 Coccidioides immitis CIMG_07756 N 0.966
CPSG_09340 Coccidioides posadasii CPSG_09340 N 0.966
EAT81253.1 Phaeosphaeria nodorum EAT81253.1 N 0.868
estExt_fgenesh1_pm.C_520029 Neurospora tetrasperma estExt_fgenesh1_pm.C_520029 N 0.835
estExt_fgenesh2_kg.C_40081 Thielavia terrestris estExt_fgenesh2_kg.C_40081 N 0.801
estExt_fgenesh2_pg.C_40625 Neurospora discreta estExt_fgenesh2_pg.C_40625 N 0.835
estExt_Genewise1.C_22136 Myceliophthora thermophila estExt_Genewise1.C_22136 N 0.816
estExt_Genewise1.C_280098 Cochliobolus heterostrophus C5 estExt_Genewise1.C_280098 N 0.874
estExt_Genewise1.C_80620 Trichoderma atroviride estExt_Genewise1.C_80620 N 0.841
estExt_Genewise1.C_90098 Mycosphaerella fijiensis estExt_Genewise1.C_90098 N 0.865
estExt_Genewise1Plus.C_61164 Cryphonectria parasitica estExt_Genewise1Plus.C_61164 N 0.812
estExt_Genewise1Plus.C_chr_10431 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_10431 N 0.860
estExt_Genewise1Plus.C_sca_18_chr2_1_00442 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00442 N 0.864
e_gw1.3.851.1 Trichoderma reesei e_gw1.3.851.1 N 0.864
fgenesh1_pm.00868_#_106 Aspergillus carbonarius fgenesh1_pm.00868_#_106 N 0.995
FGSG_05737 Fusarium graminearum FGSG_05737 N 0.845
FOXG_08762 Fusarium oxysporum FOXG_08762 N 0.831
FVEG_05907 Fusarium verticillioides FVEG_05907 N 0.821
GLRG_08999 Colletotrichum graminicola GLRG_08999 N 0.841
GSTUMT00001670001 Tuber melanosporum GSTUMT00001670001 N 0.922
gw1.13.164.1 Trichoderma virens gw1.13.164.1 N 0.864
HCAG_04410 Histoplasma capsulatum HCAG_04410 N 0.946
MGG_08741 Magnaporthe oryzae MGG_08741 N 0.826
MGYG_05892 Microsporum gypseum MGYG_05892 N 0.941
NCU00768 Neurospora crassa NCU00768 N 0.835
NFIA_114950 Neosartorya fischeri CADNFIAG00010593 N 0.985
PABG_01162 Paracoccidioides brasiliensis PABG_01162 N 0.961
Pa_1_5920 Podospora anserina Pa_1_5920 N 0.835
Pc21g11890 Penicillium chrysogenum Pc21g11890 N 0.985
PMAA_010670 Penicillium marneffei PMAA_010670 N 0.976
PredSwiss_ASS2010_2387.1 Pneumocystis carinii PredSwiss_ASS2010_2387.1 N 0.850
PredSwiss_CON474.2 Pneumocystis carinii PredSwiss_CON474.2 N 0.860
PTRG_04758 Pyrenophora tritici repentis PTRG_04758 N 0.869
SJAG_00474 Schizosaccharomyces japonicus SJAG_00474 N 0.748
SNOG_11545 Stagonospora nodorum SNOG_11545 N 0.868
UREG_02108 Uncinocarpus reesii UREG_02108 N 0.966
VDAG_02878 Verticillium dahliae VDAG_02878 N 0.841
VDBG_02406 Verticillium albo atrum VDBG_02406 N 0.841