estExt_Genewise1Plus.C_sca_18_chr2_1_00442 (Nectria haematococca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_sca_18_chr2_1_00442 T51535_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_sca_18_chr2_1_00442 RRM 52 119
estExt_Genewise1Plus.C_sca_18_chr2_1_00442 RRM 145 216
estExt_Genewise1Plus.C_sca_18_chr2_1_00442 RRM 279 343

Links

Other RRM family RBPs
Other Nectria haematococca RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.13.164.1 Trichoderma virens gw1.13.164.1 N 0.990
e_gw1.3.851.1 Trichoderma reesei e_gw1.3.851.1 N 0.990
estExt_Genewise1.C_80620 Trichoderma atroviride estExt_Genewise1.C_80620 N 0.961
FGSG_05737 Fusarium graminearum FGSG_05737 N 0.961
FOXG_08762 Fusarium oxysporum FOXG_08762 N 0.951
FVEG_05907 Fusarium verticillioides FVEG_05907 N 0.937
GLRG_08999 Colletotrichum graminicola GLRG_08999 N 0.932
VDBG_02406 Verticillium albo atrum VDBG_02406 N 0.922
VDAG_02878 Verticillium dahliae VDAG_02878 N 0.922
MGG_08741 Magnaporthe oryzae MGG_08741 N 0.903
Pa_1_5920 Podospora anserina Pa_1_5920 N 0.902
NCU00768 Neurospora crassa NCU00768 N 0.898
estExt_fgenesh1_pm.C_520029 Neurospora tetrasperma estExt_fgenesh1_pm.C_520029 N 0.898
estExt_fgenesh2_pg.C_40625 Neurospora discreta estExt_fgenesh2_pg.C_40625 N 0.898
estExt_fgenesh2_kg.C_40081 Thielavia terrestris estExt_fgenesh2_kg.C_40081 N 0.878
estExt_Genewise1.C_22136 Myceliophthora thermophila estExt_Genewise1.C_22136 N 0.874
NFIA_114950 Neosartorya fischeri CADNFIAG00010593 N 0.869
AO090038000602 Aspergillus oryzae CADAORAG00009349 N 0.869
ACLA_065300 Aspergillus clavatus CADACLAG00006222 N 0.869
AFUA_7G02230 Aspergillus fumigatus CADAFUAG00001190 N 0.869
Pc21g11890 Penicillium chrysogenum Pc21g11890 N 0.865
An12g00410 Aspergillus niger CADANGAG00009490 N 0.864
PABG_01162 Paracoccidioides brasiliensis PABG_01162 N 0.864
PMAA_010670 Penicillium marneffei PMAA_010670 N 0.864
GSTUMT00001670001 Tuber melanosporum GSTUMT00001670001 N 0.863
ANIA_09090 Aspergillus nidulans CADANIAG00009524 N 0.860
fgenesh1_pm.00868_#_106 Aspergillus carbonarius fgenesh1_pm.00868_#_106 N 0.860
BDBG_04017 Blastomyces dermatitidis BDBG_04017 N 0.859
CIMG_07756 Coccidioides immitis CIMG_07756 N 0.854
AFLA_071390 Aspergillus flavus CADAFLAG00008563 N 0.854
CPSG_09340 Coccidioides posadasii CPSG_09340 N 0.854
UREG_02108 Uncinocarpus reesii UREG_02108 N 0.854
estExt_Genewise1Plus.C_61164 Cryphonectria parasitica estExt_Genewise1Plus.C_61164 N 0.850
BC1G_12954 Botrytis cinerea BC1G_12954 N 0.850
HCAG_04410 Histoplasma capsulatum HCAG_04410 N 0.850
MGYG_05892 Microsporum gypseum MGYG_05892 N 0.845
ARB_04665 Arthroderma benhamiae ARB_04665 N 0.840
estExt_Genewise1.C_90098 Mycosphaerella fijiensis estExt_Genewise1.C_90098 N 0.816
estExt_Genewise1.C_280098 Cochliobolus heterostrophus C5 estExt_Genewise1.C_280098 N 0.816
estExt_Genewise1Plus.C_chr_10431 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_10431 N 0.812
PTRG_04758 Pyrenophora tritici repentis PTRG_04758 N 0.806
SNOG_11545 Stagonospora nodorum SNOG_11545 N 0.805
EAT81253.1 Phaeosphaeria nodorum EAT81253.1 N 0.805
PredSwiss_CON474.2 Pneumocystis carinii PredSwiss_CON474.2 N 0.803
PredSwiss_ASS2010_2387.1 Pneumocystis carinii PredSwiss_ASS2010_2387.1 N 0.793
SJAG_00474 Schizosaccharomyces japonicus SJAG_00474 N 0.718