PredSwiss_CON474.2 (Pneumocystis carinii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PredSwiss_CON474.2 T54715_0.6 Pneumocystis Genome Project (2010-Oct-5)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PredSwiss_CON474.2 RRM 68 133
PredSwiss_CON474.2 RRM 158 229
PredSwiss_CON474.2 RRM 274 338

Links

Other RRM family RBPs
Other Pneumocystis carinii RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PredSwiss_ASS2010_2387.1 Pneumocystis carinii PredSwiss_ASS2010_2387.1 N 0.966
GSTUMT00001670001 Tuber melanosporum GSTUMT00001670001 N 0.874
AFUA_7G02230 Aspergillus fumigatus CADAFUAG00001190 N 0.870
AO090038000602 Aspergillus oryzae CADAORAG00009349 N 0.870
PABG_01162 Paracoccidioides brasiliensis PABG_01162 N 0.870
Pc21g11890 Penicillium chrysogenum Pc21g11890 N 0.870
PMAA_010670 Penicillium marneffei PMAA_010670 N 0.870
NFIA_114950 Neosartorya fischeri CADNFIAG00010593 N 0.865
ACLA_065300 Aspergillus clavatus CADACLAG00006222 N 0.865
An12g00410 Aspergillus niger CADANGAG00009490 N 0.860
BC1G_12954 Botrytis cinerea BC1G_12954 N 0.860
fgenesh1_pm.00868_#_106 Aspergillus carbonarius fgenesh1_pm.00868_#_106 N 0.860
BDBG_04017 Blastomyces dermatitidis BDBG_04017 N 0.860
ANIA_09090 Aspergillus nidulans CADANIAG00009524 N 0.860
AFLA_071390 Aspergillus flavus CADAFLAG00008563 N 0.855
UREG_02108 Uncinocarpus reesii UREG_02108 N 0.855
CPSG_09340 Coccidioides posadasii CPSG_09340 N 0.855
CIMG_07756 Coccidioides immitis CIMG_07756 N 0.855
HCAG_04410 Histoplasma capsulatum HCAG_04410 N 0.850
MGYG_05892 Microsporum gypseum MGYG_05892 N 0.826
ARB_04665 Arthroderma benhamiae ARB_04665 N 0.821
estExt_Genewise1.C_90098 Mycosphaerella fijiensis estExt_Genewise1.C_90098 N 0.812
VDBG_02406 Verticillium albo atrum VDBG_02406 N 0.804
VDAG_02878 Verticillium dahliae VDAG_02878 N 0.804
estExt_Genewise1Plus.C_sca_18_chr2_1_00442 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00442 N 0.803
estExt_Genewise1Plus.C_chr_10431 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_10431 N 0.802
gw1.13.164.1 Trichoderma virens gw1.13.164.1 N 0.798
e_gw1.3.851.1 Trichoderma reesei e_gw1.3.851.1 N 0.798
SNOG_11545 Stagonospora nodorum SNOG_11545 N 0.797
estExt_Genewise1.C_280098 Cochliobolus heterostrophus C5 estExt_Genewise1.C_280098 N 0.797
EAT81253.1 Phaeosphaeria nodorum EAT81253.1 N 0.797
GLRG_08999 Colletotrichum graminicola GLRG_08999 N 0.794
PTRG_04758 Pyrenophora tritici repentis PTRG_04758 N 0.792
estExt_Genewise1.C_80620 Trichoderma atroviride estExt_Genewise1.C_80620 N 0.789
Pa_1_5920 Podospora anserina Pa_1_5920 N 0.788
FGSG_05737 Fusarium graminearum FGSG_05737 N 0.788
MGG_08741 Magnaporthe oryzae MGG_08741 N 0.780
FOXG_08762 Fusarium oxysporum FOXG_08762 N 0.775
estExt_fgenesh2_pg.C_40625 Neurospora discreta estExt_fgenesh2_pg.C_40625 N 0.774
NCU00768 Neurospora crassa NCU00768 N 0.774
estExt_fgenesh1_pm.C_520029 Neurospora tetrasperma estExt_fgenesh1_pm.C_520029 N 0.774
FVEG_05907 Fusarium verticillioides FVEG_05907 N 0.770
estExt_Genewise1Plus.C_61164 Cryphonectria parasitica estExt_Genewise1Plus.C_61164 N 0.770
estExt_Genewise1.C_22136 Myceliophthora thermophila estExt_Genewise1.C_22136 N 0.770
estExt_fgenesh2_kg.C_40081 Thielavia terrestris estExt_fgenesh2_kg.C_40081 N 0.750
SJAG_00474 Schizosaccharomyces japonicus SJAG_00474 N 0.734