CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ANIA_06501
(
Aspergillus nidulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADANIAG00007269
T33641_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANIAP00007269
RRM
15
85
VYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRIMNGIRLYGKPIR
CADANIAP00007269
RRM
103
173
LFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVS
Links
Other
RRM
family RBPs
Other
Aspergillus nidulans
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_095350
Aspergillus clavatus
CADACLAG00009128
N
0.958
AFLA_054780
Aspergillus flavus
CADAFLAG00006087
N
0.951
AFUA_6G05180
Aspergillus fumigatus
CADAFUAG00000741
N
0.958
An15g00100
Aspergillus niger
CADANGAG00011688
N
0.958
ARB_04284
Arthroderma benhamiae
ARB_04284
N
0.881
ATEG_05656
Aspergillus terreus
CADATEAG00000804
N
0.912
BC1G_13457
Botrytis cinerea
BC1G_13457
N
0.818
BDBG_09421
Blastomyces dermatitidis
BDBG_09421
N
0.867
CIMG_02600
Coccidioides immitis
CIMG_02600
N
0.874
CPSG_00446
Coccidioides posadasii
CPSG_00446
N
0.874
estExt_Genewise1Plus.C_150062
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_150062
N
0.755
estExt_Genewise1Plus.C_20198
Mucor circinelloides
estExt_Genewise1Plus.C_20198
I
0.715
estExt_Genewise1Plus.C_330054
Phycomyces blakesleeanus
estExt_Genewise1Plus.C_330054
I
0.736
e_gw1.00735.103.1
Aspergillus carbonarius
e_gw1.00735.103.1
N
0.951
e_gw1.8.426.1
Mycosphaerella graminicola
e_gw1.8.426.1
N
0.734
GSTUMT00011313001
Tuber melanosporum
GSTUMT00011313001
N
0.755
HCAG_06893
Histoplasma capsulatum
HCAG_06893
N
0.867
MCYG_05258
Microsporum canis
MCYG_05258
N
0.881
MGYG_06302
Microsporum gypseum
MGYG_06302
N
0.881
NFIA_051760
Neosartorya fischeri
CADNFIAG00005042
N
0.958
PABG_07859
Paracoccidioides brasiliensis
PABG_07859
N
0.839
Pc12g04780
Penicillium chrysogenum
Pc12g04780
N
0.930
PMAA_011470
Penicillium marneffei
PMAA_011470
N
0.881
SPPG_04182
Spizellomyces punctatus
SPPG_04182
I
0.715
SS1G_09077
Sclerotinia sclerotiorum
SS1G_09077
N
0.818
TEQG_04730
Trichophyton equinum
TEQG_04730
N
0.762
TERG_06435
Trichophyton rubrum
TERG_06435
N
0.881
TRV_00155
Trichophyton verrucosum
TRV_00155
N
0.881
UREG_03156
Uncinocarpus reesii
UREG_03156
N
0.874