CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ATEG_06757
(
Aspergillus terreus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADATEAG00009116
T33777_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADATEAP00009116
RRM
193
245
VYLGNIPAETSAEEILNHVRSGQIESVRLLPDKNCAFISFLDSNSATHFHSDA
CADATEAP00009116
RRM
284
342
VYLGNLPEEMTEEELREELGKFGPIDTVKIVKEKAIGFVHYLSISNAMKAVSQLPQEAK
CADATEAP00009116
RRM
418
483
IYLGNIHPETTIEEICNVVRGGLLHHIRYIPDKHICFVTFIDPTSAASFYALSNLQGLMIHNRRLK
CADATEAP00009116
RRM
509
573
VYVGNLDESWAEERLRQDFSEYGEIELVNTLREKSCAFVNFTNIANAIKAIEGMRNREEYKRFKI
Links
Other
RRM
family RBPs
Other
Aspergillus terreus
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_pm.C_1170007
Branchiostoma floridae
estExt_fgenesh2_pm.C_1170007
N
0.000
gw1.1.325.1
Phytophthora capsici
gw1.1.325.1
N
0.000
gwEuk.85.2.1
Phytophthora ramorum
gwEuk.85.2.1
N
0.000
SPRG_13420
Saprolegnia parasitica
SPRG_13420
N
0.000
s_517330
Phytophthora sojae
s_517330
N
0.000