CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ANIA_07480
(
Aspergillus nidulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADANIAG00000573
T33598_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANIAP00000573
RRM
187
239
VYLGNIPPETPAEEILNHVRSGQIESVRLLPDKNCAFISFLDSNSATHFHSDA
CADANIAP00000573
RRM
278
337
VYLGNLPEETTEDELREELGKFGPIDTVKIVKEKAIGFVHFLSITNAMKAVSQLPQETKW
CADANIAP00000573
RRM
412
477
IYLGNIHPETTIEEICNVVRGGLLHHIRYIPDKHICFVTFIDPTSAASFYALSNLQGLMIHNRRLK
CADANIAP00000573
RRM
503
567
VYVGNLDESWAEDRLRQDFSEYGEIELVNTLREKSCAFVNFTNIANAIKAIEGMRNREEYRRFKI
Links
Other
RRM
family RBPs
Other
Aspergillus nidulans
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFLA_129820
Aspergillus flavus
CADAFLAG00010040
N
0.963
AO090001000681
Aspergillus oryzae
CADAORAG00000620
N
0.959
ATEG_06757
Aspergillus terreus
CADATEAG00009116
N
0.959
ACLA_068670
Aspergillus clavatus
CADACLAG00006690
N
0.955
NFIA_082390
Neosartorya fischeri
CADNFIAG00007689
N
0.955
AFUA_2G05670
Aspergillus fumigatus
CADAFUAG00003365
N
0.951
fgenesh1_pm.00082_#_76
Aspergillus carbonarius
fgenesh1_pm.00082_#_76
N
0.951
An02g14100
Aspergillus niger
CADANGAG00002937
N
0.943
Pc22g08880
Penicillium chrysogenum
Pc22g08880
N
0.922
estExt_Genewise1.C_240173
Cochliobolus heterostrophus C5
estExt_Genewise1.C_240173
N
0.918
PMAA_071470
Penicillium marneffei
PMAA_071470
N
0.918
EAT78895.1
Phaeosphaeria nodorum
EAT78895.1
N
0.906
BC1G_14118
Botrytis cinerea
BC1G_14118
N
0.906
SNOG_13871
Stagonospora nodorum
SNOG_13871
N
0.906
GSTUMT00008077001
Tuber melanosporum
GSTUMT00008077001
N
0.902
SS1G_13716
Sclerotinia sclerotiorum
SS1G_13716
N
0.902
CIMG_00769
Coccidioides immitis
CIMG_00769
N
0.902
UREG_00743
Uncinocarpus reesii
UREG_00743
N
0.902
CPSG_07981
Coccidioides posadasii
CPSG_07981
N
0.894
PTRG_09392
Pyrenophora tritici repentis
PTRG_09392
N
0.893
BDBG_09466
Blastomyces dermatitidis
BDBG_09466
N
0.889
estExt_Genewise1Plus.C_chr_30420
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_30420
N
0.889
estExt_fgenesh1_pg.C_260060
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_260060
N
0.885
estExt_fgenesh1_pm.C_60118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_60118
N
0.881
PABG_04754
Paracoccidioides brasiliensis
PABG_04754
N
0.881
MCYG_03534
Microsporum canis
MCYG_03534
N
0.881
NCU06459
Neurospora crassa
NCU06459
N
0.881
estExt_Genewise1.C_32212
Thielavia terrestris
estExt_Genewise1.C_32212
N
0.881
Pa_7_9880
Podospora anserina
Pa_7_9880
N
0.881
TERG_04964
Trichophyton rubrum
TERG_04964
N
0.878
TESG_05970
Trichophyton tonsurans
TESG_05970
N
0.877
estExt_fgenesh3_kg.C_190032
Neurospora discreta
estExt_fgenesh3_kg.C_190032
N
0.877
TEQG_01254
Trichophyton equinum
TEQG_01254
N
0.877
MGYG_03143
Microsporum gypseum
MGYG_03143
N
0.877
ARB_03865
Arthroderma benhamiae
ARB_03865
N
0.877
fgenesh1_pg.4_#_772
Myceliophthora thermophila
fgenesh1_pg.4_#_772
N
0.877
VDAG_06364
Verticillium dahliae
VDAG_06364
N
0.869
CHGG_05709
Chaetomium globosum
CHGG_05709
N
0.869
estExt_fgenesh1_pm.C_10719
Cryphonectria parasitica
estExt_fgenesh1_pm.C_10719
N
0.869
MGG_08898
Magnaporthe oryzae
MGG_08898
N
0.865
estExt_fgenesh1_pg.C_sca_10_chr8_2_00298
Nectria haematococca
estExt_fgenesh1_pg.C_sca_10_chr8_2_00298
N
0.865
FGSG_05444
Fusarium graminearum
FGSG_05444
N
0.865
FOXG_09455
Fusarium oxysporum
FOXG_09455
N
0.861
FVEG_07083
Fusarium verticillioides
FVEG_07083
N
0.861
e_gw1.17.287.1
Trichoderma reesei
e_gw1.17.287.1
N
0.857
GLRG_03643
Colletotrichum graminicola
GLRG_03643
N
0.852
e_gw1.10.53.1
Trichoderma virens
e_gw1.10.53.1
N
0.848
e_gw1.15.72.1
Trichoderma atroviride
e_gw1.15.72.1
N
0.844
VDBG_08703
Verticillium albo atrum
VDBG_08703
N
0.840