CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_pm.C_60118
(
Neurospora tetrasperma
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh1_pm.C_60118
T50722_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pm.C_60118
RRM
203
255
VYLGNIPPDTSAEEILGHVRSGQIESVRLLPDKNCAFISFLDASSATHFHSDA
estExt_fgenesh1_pm.C_60118
RRM
294
351
VYLGNLPEEVTEEELREDLGKFGAIDTVKIVKEKSIAFVHFLSIANAIKAVAQLPQEP
estExt_fgenesh1_pm.C_60118
RRM
428
493
IYLGNIHPETTIEEICNVVRGGLLHHIRYIPDKHICFVTFIDPTAAASFFALSNLQGLMIHNRRLK
estExt_fgenesh1_pm.C_60118
RRM
519
582
VYIGNLDETWTEERLRQDFSEYGEIELVNTLREKSCAFVNFTNIANAIKAIEAVRSKEEYRKFK
Links
Other
RRM
family RBPs
Other
Neurospora tetrasperma
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NCU06459
Neurospora crassa
NCU06459
N
0.996
estExt_fgenesh3_kg.C_190032
Neurospora discreta
estExt_fgenesh3_kg.C_190032
N
0.992
fgenesh1_pg.4_#_772
Myceliophthora thermophila
fgenesh1_pg.4_#_772
N
0.967
VDAG_06364
Verticillium dahliae
VDAG_06364
N
0.959
CHGG_05709
Chaetomium globosum
CHGG_05709
N
0.954
GLRG_03643
Colletotrichum graminicola
GLRG_03643
N
0.954
estExt_fgenesh1_pm.C_10719
Cryphonectria parasitica
estExt_fgenesh1_pm.C_10719
N
0.946
MGG_08898
Magnaporthe oryzae
MGG_08898
N
0.946
estExt_Genewise1.C_32212
Thielavia terrestris
estExt_Genewise1.C_32212
N
0.942
estExt_fgenesh1_pg.C_sca_10_chr8_2_00298
Nectria haematococca
estExt_fgenesh1_pg.C_sca_10_chr8_2_00298
N
0.942
FGSG_05444
Fusarium graminearum
FGSG_05444
N
0.942
Pa_7_9880
Podospora anserina
Pa_7_9880
N
0.938
FVEG_07083
Fusarium verticillioides
FVEG_07083
N
0.938
FOXG_09455
Fusarium oxysporum
FOXG_09455
N
0.938
e_gw1.10.53.1
Trichoderma virens
e_gw1.10.53.1
N
0.934
e_gw1.17.287.1
Trichoderma reesei
e_gw1.17.287.1
N
0.930
e_gw1.15.72.1
Trichoderma atroviride
e_gw1.15.72.1
N
0.930
VDBG_08703
Verticillium albo atrum
VDBG_08703
N
0.929
estExt_fgenesh1_pg.C_260060
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_260060
N
0.921
BC1G_14118
Botrytis cinerea
BC1G_14118
N
0.917
SS1G_13716
Sclerotinia sclerotiorum
SS1G_13716
N
0.913
PMAA_071470
Penicillium marneffei
PMAA_071470
N
0.909
BDBG_09466
Blastomyces dermatitidis
BDBG_09466
N
0.905
SNOG_13871
Stagonospora nodorum
SNOG_13871
N
0.901
PABG_04754
Paracoccidioides brasiliensis
PABG_04754
N
0.901
EAT78895.1
Phaeosphaeria nodorum
EAT78895.1
N
0.901
GSTUMT00008077001
Tuber melanosporum
GSTUMT00008077001
N
0.901
estExt_Genewise1.C_240173
Cochliobolus heterostrophus C5
estExt_Genewise1.C_240173
N
0.897
PTRG_09392
Pyrenophora tritici repentis
PTRG_09392
N
0.897
AFUA_2G05670
Aspergillus fumigatus
CADAFUAG00003365
N
0.893
NFIA_082390
Neosartorya fischeri
CADNFIAG00007689
N
0.889
fgenesh1_pm.00082_#_76
Aspergillus carbonarius
fgenesh1_pm.00082_#_76
N
0.889
Pc22g08880
Penicillium chrysogenum
Pc22g08880
N
0.888
ATEG_06757
Aspergillus terreus
CADATEAG00009116
N
0.885
AFLA_129820
Aspergillus flavus
CADAFLAG00010040
N
0.885
ANIA_07480
Aspergillus nidulans
CADANIAG00000573
N
0.881
An02g14100
Aspergillus niger
CADANGAG00002937
N
0.881
AO090001000681
Aspergillus oryzae
CADAORAG00000620
N
0.881
ACLA_068670
Aspergillus clavatus
CADACLAG00006690
N
0.881
estExt_Genewise1Plus.C_chr_30420
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_30420
N
0.881
CIMG_00769
Coccidioides immitis
CIMG_00769
N
0.881
MCYG_03534
Microsporum canis
MCYG_03534
N
0.881
TERG_04964
Trichophyton rubrum
TERG_04964
N
0.877
MGYG_03143
Microsporum gypseum
MGYG_03143
N
0.877
ARB_03865
Arthroderma benhamiae
ARB_03865
N
0.877
UREG_00743
Uncinocarpus reesii
UREG_00743
N
0.877
TEQG_01254
Trichophyton equinum
TEQG_01254
N
0.877
TESG_05970
Trichophyton tonsurans
TESG_05970
N
0.877
CPSG_07981
Coccidioides posadasii
CPSG_07981
N
0.873