CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSTUMT00008077001
(
Tuber melanosporum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSTUMT00008077001
T56946_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSTUMT00008077001
RRM
136
188
VYLGNIPPETSAEEILGHVRSGQIESVRLLPDKNCAFISFLDSSSANHFHSDA
GSTUMT00008077001
RRM
227
285
VYLGNLPEDVSEEELREDLGKFGPIDTVKIVREKAIGFVHFLSIGNAIKAVSQLPQEAK
GSTUMT00008077001
RRM
361
426
VYLGNIHPETTIEEICNVVRGGLLHHIRYIPDKHICFVTFIDPTAAASFYALSNLQGLMIHNRRLK
GSTUMT00008077001
RRM
452
516
VYVGNLDESWSEERLRQDFSEYGEIELVNALREKSCAFVNFTNIANAIKAIEAVRGREEYKRFKI
Links
Other
RRM
family RBPs
Other
Tuber melanosporum
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTRG_09392
Pyrenophora tritici repentis
PTRG_09392
N
0.951
estExt_Genewise1.C_240173
Cochliobolus heterostrophus C5
estExt_Genewise1.C_240173
N
0.951
EAT78895.1
Phaeosphaeria nodorum
EAT78895.1
N
0.947
SNOG_13871
Stagonospora nodorum
SNOG_13871
N
0.947
BC1G_14118
Botrytis cinerea
BC1G_14118
N
0.938
SS1G_13716
Sclerotinia sclerotiorum
SS1G_13716
N
0.934
estExt_Genewise1.C_32212
Thielavia terrestris
estExt_Genewise1.C_32212
N
0.926
BDBG_09466
Blastomyces dermatitidis
BDBG_09466
N
0.926
Pa_7_9880
Podospora anserina
Pa_7_9880
N
0.922
CIMG_00769
Coccidioides immitis
CIMG_00769
N
0.922
CPSG_07981
Coccidioides posadasii
CPSG_07981
N
0.918
AFUA_2G05670
Aspergillus fumigatus
CADAFUAG00003365
N
0.918
AFLA_129820
Aspergillus flavus
CADAFLAG00010040
N
0.918
PABG_04754
Paracoccidioides brasiliensis
PABG_04754
N
0.918
estExt_fgenesh1_pg.C_260060
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_260060
N
0.918
fgenesh1_pg.4_#_772
Myceliophthora thermophila
fgenesh1_pg.4_#_772
N
0.918
An02g14100
Aspergillus niger
CADANGAG00002937
N
0.914
AO090001000681
Aspergillus oryzae
CADAORAG00000620
N
0.914
PMAA_071470
Penicillium marneffei
PMAA_071470
N
0.914
NFIA_082390
Neosartorya fischeri
CADNFIAG00007689
N
0.914
ATEG_06757
Aspergillus terreus
CADATEAG00009116
N
0.914
fgenesh1_pm.00082_#_76
Aspergillus carbonarius
fgenesh1_pm.00082_#_76
N
0.914
estExt_fgenesh1_pg.C_sca_10_chr8_2_00298
Nectria haematococca
estExt_fgenesh1_pg.C_sca_10_chr8_2_00298
N
0.909
VDAG_06364
Verticillium dahliae
VDAG_06364
N
0.909
CHGG_05709
Chaetomium globosum
CHGG_05709
N
0.909
UREG_00743
Uncinocarpus reesii
UREG_00743
N
0.909
ACLA_068670
Aspergillus clavatus
CADACLAG00006690
N
0.906
ANIA_07480
Aspergillus nidulans
CADANIAG00000573
N
0.902
e_gw1.10.53.1
Trichoderma virens
e_gw1.10.53.1
N
0.901
MCYG_03534
Microsporum canis
MCYG_03534
N
0.901
estExt_fgenesh1_pm.C_60118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_60118
N
0.901
e_gw1.17.287.1
Trichoderma reesei
e_gw1.17.287.1
N
0.901
NCU06459
Neurospora crassa
NCU06459
N
0.901
estExt_fgenesh3_kg.C_190032
Neurospora discreta
estExt_fgenesh3_kg.C_190032
N
0.897
e_gw1.15.72.1
Trichoderma atroviride
e_gw1.15.72.1
N
0.897
MGG_08898
Magnaporthe oryzae
MGG_08898
N
0.897
estExt_Genewise1Plus.C_chr_30420
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_30420
N
0.893
FGSG_05444
Fusarium graminearum
FGSG_05444
N
0.893
FOXG_09455
Fusarium oxysporum
FOXG_09455
N
0.893
FVEG_07083
Fusarium verticillioides
FVEG_07083
N
0.893
GLRG_03643
Colletotrichum graminicola
GLRG_03643
N
0.893
TERG_04964
Trichophyton rubrum
TERG_04964
N
0.889
estExt_fgenesh1_pm.C_10719
Cryphonectria parasitica
estExt_fgenesh1_pm.C_10719
N
0.889
ARB_03865
Arthroderma benhamiae
ARB_03865
N
0.889
TESG_05970
Trichophyton tonsurans
TESG_05970
N
0.889
MGYG_03143
Microsporum gypseum
MGYG_03143
N
0.889
TEQG_01254
Trichophyton equinum
TEQG_01254
N
0.889
Pc22g08880
Penicillium chrysogenum
Pc22g08880
N
0.885
VDBG_08703
Verticillium albo atrum
VDBG_08703
N
0.885