ENSCAFG00000014094 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000014094 T35124_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.879
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.879
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.879
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.858
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000032450 RRM 10 79
ENSCAFP00000032450 RRM 101 168

Links

Other RRM family RBPs
Other Canis familiaris RBPs

240 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29818.m000389 Ricinus communis 29818.m000389 N 0.000
BRADI2G53210 Brachypodium distachyon BRADI2G53210 N 0.000
cassava12379.valid.m1 Manihot esculenta cassava12379.valid.m1 N 0.000
Cucsa.337020 Cucumis sativus Cucsa.337020 N 0.000
Glyma03g00950.1 Glycine max Glyma03g00950.1 N 0.000
Glyma19g29710.1 Glycine max Glyma19g29710.1 N 0.000
GRMZM2G069106 Zea mays GRMZM2G069106 N 0.000
GRMZM2G312244 Zea mays GRMZM2G312244 N 0.000
GSVIVG00029939001 Vitis vinifera GSVIVG00029939001 N 0.000
LjT26C04.50.nd Lotus japonicus LjT26C04.50.nd N 0.000
LOC_Os01g59980 Oryza sativa LOC_Os01g59980 N 0.000
MDP0000224484 Malus x domestica MDP0000224484 N 0.000
Medtr7g103850 Medicago truncatula Medtr7g103850 N 0.000
PK08935.1 Cannabis sativa PK08935.1 N 0.000
ppa001151m Prunus persica ppa001151m N 0.000
VAR3 Arabidopsis thaliana AT5G17790-TAIR-G N 0.000
XM_002873808.1 Arabidopsis lyrata Al_scaffold_0006_1692 N 0.000