CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCAFG00000014094
(
Canis familiaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCAFG00000014094
T35124_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.879
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.879
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.879
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.858
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.723
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000032450
RRM
10
79
LFIGGLSFETTDESLRSHFEQWRMLTDRVVMRDPNTKCSRGFGFVTNVTVEEVDATMNARPPKVDGRVVE
ENSCAFP00000032450
RRM
101
168
IFAGGIKEDTEEHYLRDYFEQYEKIEVIEIMTDRGKKRGFAFVTFDDHDSVDKIAIQKYHPVNGHNCE
Links
Other
RRM
family RBPs
Other
Canis familiaris
RBPs
240 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29818.m000389
Ricinus communis
29818.m000389
N
0.000
BRADI2G53210
Brachypodium distachyon
BRADI2G53210
N
0.000
cassava12379.valid.m1
Manihot esculenta
cassava12379.valid.m1
N
0.000
Cucsa.337020
Cucumis sativus
Cucsa.337020
N
0.000
Glyma03g00950.1
Glycine max
Glyma03g00950.1
N
0.000
Glyma19g29710.1
Glycine max
Glyma19g29710.1
N
0.000
GRMZM2G069106
Zea mays
GRMZM2G069106
N
0.000
GRMZM2G312244
Zea mays
GRMZM2G312244
N
0.000
GSVIVG00029939001
Vitis vinifera
GSVIVG00029939001
N
0.000
LjT26C04.50.nd
Lotus japonicus
LjT26C04.50.nd
N
0.000
LOC_Os01g59980
Oryza sativa
LOC_Os01g59980
N
0.000
MDP0000224484
Malus x domestica
MDP0000224484
N
0.000
Medtr7g103850
Medicago truncatula
Medtr7g103850
N
0.000
PK08935.1
Cannabis sativa
PK08935.1
N
0.000
ppa001151m
Prunus persica
ppa001151m
N
0.000
VAR3
Arabidopsis thaliana
AT5G17790-TAIR-G
N
0.000
XM_002873808.1
Arabidopsis lyrata
Al_scaffold_0006_1692
N
0.000