ENSCAFG00000014094 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000014094 T35124_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.879
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.879
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.879
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.858
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000032450 RRM 10 79
ENSCAFP00000032450 RRM 101 168

Links

Other RRM family RBPs
Other Canis familiaris RBPs

240 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.929
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.887
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.879
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.879
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.879
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.879
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.879
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.879
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.879
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.879
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.879
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.879
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.879
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.879
HNRNPA1 Homo sapiens ENSG00000135486 D 0.879
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.879
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.879
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.879
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.879
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.879
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.879
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.879
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.879
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.879
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.879
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.879
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.879
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.879
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.879
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.879
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.879
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.879
LOC785445 Bos taurus ENSBTAG00000025621 I 0.879
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.872
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.872
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.872
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.872
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.872
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.872
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.872
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.871
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.865
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.865
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.865
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.865
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.865
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.865
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.865
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.864
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.858
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.858
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.858
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.858
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.858
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.858
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.858
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.858
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.858
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.857
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.851
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.851
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.851
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.851
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.851
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.851
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.850
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.850
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.845
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.844
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.844
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.844
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.843
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.843
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.843
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.838
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.837
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.837
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.837
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.836
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.836
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.836
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.836
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.836
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.830
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.830
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.829
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.829
LOC100054206 Equus caballus ENSECAG00000006699 I 0.824
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.821
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.821
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.817
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.817
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.816
AAH45260 Xenopus laevis AAH45260 I 0.816
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.816
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.816
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.814
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.814
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.814
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.814
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.811
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.810
CBU92546 Xenopus laevis CBU92546 I 0.809
AAH72090 Xenopus laevis AAH72090 I 0.809
CBF67672 Xenopus laevis CBF67672 I 0.809
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.807
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.807
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.807
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.803
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.803
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.803
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.803
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.801
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.800
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.800
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.800
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.797
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.794
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.794
CBF67555 Xenopus laevis CBF67555 I 0.794
CBU92428 Xenopus laevis CBU92428 I 0.794
P17130 Xenopus laevis P17130 I 0.794
AAA49742 Xenopus laevis AAA49742 I 0.794
AAA49741 Xenopus laevis AAA49741 I 0.794
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.794
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.793
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.793
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.790
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.789
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.789
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.789
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.789
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.783
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.782
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.780
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.780
AAA49949 Xenopus laevis AAA49949 I 0.780
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.780
Gm8991 Mus musculus ENSMUSG00000059179 I 0.780
P51968 Xenopus laevis P51968 I 0.780
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.779
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.779
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.775
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.775
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.775
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.775
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.775
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.775
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.775
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.775
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.775
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.775
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.775
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.775
HNRNPA3 Homo sapiens ENSG00000170144 I 0.775
LOC781499 Bos taurus ENSBTAG00000021580 I 0.775
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.775
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.775
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.775
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.775
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.775
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.775
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.773
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.773
LOC100066794 Equus caballus ENSECAG00000023237 I 0.773
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.773
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.771
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.771
AAA49950 Xenopus laevis AAA49950 I 0.769
P51992 Xenopus laevis P51992 I 0.769
CBF67578 Xenopus laevis CBF67578 I 0.769
CBU92451 Xenopus laevis CBU92451 I 0.769
AAI69881 Xenopus laevis AAI69881 I 0.769
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.768
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.768
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.768
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.766
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.764
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.761
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.760
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.759
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.759
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.759
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.757
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.755
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.754
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.752
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.748
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.748
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.746
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.746
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.745
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.745
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.745
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.741
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.739
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.736
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.736
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.733
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.732
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.730
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.730
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.730
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.729
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.727
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.726
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.724
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.724
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.723
zgc:66127 Danio rerio ENSDARG00000011020 I 0.723
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.722
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.721
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.720
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.718
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.717
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.716
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.716
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.716
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.715
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.714
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.713
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.712
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.712
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.711
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.711
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.711
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.711
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.710
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.710
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.710
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.709
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.709
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.709
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.705
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.705
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.704
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.704
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.703
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.702
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.701