MSI1 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000009412 T38023_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.707
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000007889 RRM 1 58
ENSLAFP00000007889 RRM 101 147
ENSLAFP00000019585 RRM 1 58
ENSLAFP00000019585 RRM 97 149

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49920 Xenopus laevis AAA49920 I 0.700
AAH82667 Xenopus laevis AAH82667 I 0.700
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.805
CBF67566 Xenopus laevis CBF67566 I 0.700
CBU92439 Xenopus laevis CBU92439 I 0.700
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.741
LOC100053469 Equus caballus ENSECAG00000017526 I 0.773
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.700
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.736
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.729
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.805
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.789
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.734
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.797
Msi1 Mus musculus ENSMUSG00000054256 I 0.769
MSI1 Canis familiaris ENSCAFG00000010283 I 0.725
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.736
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.736
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.721
MSI1 Echinops telfairi ENSETEG00000004756 I 0.789
MSI1 Felis catus ENSFCAG00000011007 I 0.797
MSI1 Homo sapiens ENSG00000135097 D 0.736
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.805
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.729
MSI2 Bos taurus ENSBTAG00000004406 N 0.714