Msi1 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000001156 T41001_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.907
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.907
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000001531 RRM 1 58
ENSRNOP00000001531 RRM 78 147
ENSRNOP00000001532 RRM 1 58
ENSRNOP00000001532 RRM 78 147

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.992
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.992
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.984
MSI1 Felis catus ENSFCAG00000011007 I 0.984
MSI1 Echinops telfairi ENSETEG00000004756 I 0.977
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.969
LOC100053469 Equus caballus ENSECAG00000017526 I 0.961
Msi1 Mus musculus ENSMUSG00000054256 I 0.955
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.922
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.914
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.907
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.907
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.907
MSI1 Homo sapiens ENSG00000135097 D 0.907
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.900
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.900
MSI1 Canis familiaris ENSCAFG00000010283 I 0.887
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.886
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.875
AAH82667 Xenopus laevis AAH82667 I 0.871
AAA49920 Xenopus laevis AAA49920 I 0.871
CBU92439 Xenopus laevis CBU92439 I 0.871
CBF67566 Xenopus laevis CBF67566 I 0.871
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.871
AAH84959 Xenopus laevis AAH84959 I 0.864
AAA49919 Xenopus laevis AAA49919 I 0.864
msi1 Danio rerio ENSDARG00000010710 I 0.850
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.836
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.821
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.821
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.821
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.821
MSI1 Loxodonta africana ENSLAFG00000009412 I 0.805
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.805
ENSMGAG00000008742 Meleagris gallopavo ENSMGAG00000008742 I 0.781
MSI1 Ochotona princeps ENSOPRG00000016879 I 0.781
msi2b Danio rerio ENSDARG00000032614 I 0.771
LOC100070744 Equus caballus ENSECAG00000011435 I 0.766
AAA50004 Xenopus laevis AAA50004 I 0.764
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.764
Msi2 Mus musculus ENSMUSG00000069769 I 0.764
MSI2 Microcebus murinus ENSMICG00000013598 I 0.764
MSI2 Homo sapiens ENSG00000153944 I 0.764
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.764
AAI69841 Xenopus laevis AAI69841 I 0.764
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.764
msi2a Danio rerio ENSDARG00000033901 I 0.757
MSI2 Canis familiaris ENSCAFG00000017418 I 0.757
MSI2 Macaca mulatta ENSMMUG00000002069 I 0.756
AGAP006656 Anopheles gambiae AGAP006656 N 0.750
nasonia_NCBI_hmm598804 Nasonia vitripennis nasonia_NCBI_hmm598804 N 0.729
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.729
MSI1 Macropus eugenii ENSMEUG00000015759 N 0.727
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.714
MSI2 Cavia porcellus ENSCPOG00000008752 N 0.703