AAA49920 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA49920 T59419_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.964
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.964
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA49920 RRM 22 91
AAA49920 RRM 111 180

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

61 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
msi1 Xenopus tropicalis ENSXETG00000012216 I 1.000
CBF67566 Xenopus laevis CBF67566 I 1.000
CBU92439 Xenopus laevis CBU92439 I 1.000
AAH82667 Xenopus laevis AAH82667 I 1.000
AAH84959 Xenopus laevis AAH84959 I 0.993
AAA49919 Xenopus laevis AAA49919 I 0.993
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.971
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.964
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.964
MSI1 Homo sapiens ENSG00000135097 D 0.964
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.957
Msi1 Mus musculus ENSMUSG00000054256 I 0.957
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.957
MSI1 Canis familiaris ENSCAFG00000010283 I 0.944
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.943
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.936
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.900
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.900
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.900
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.886
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.879
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.879
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.871
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.871
MSI1 Felis catus ENSFCAG00000011007 I 0.871
MSI1 Echinops telfairi ENSETEG00000004756 I 0.864
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.857
LOC100053469 Equus caballus ENSECAG00000017526 I 0.850
msi2b Danio rerio ENSDARG00000032614 I 0.843
MSI2 Homo sapiens ENSG00000153944 I 0.836
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.836
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.836
MSI2 Microcebus murinus ENSMICG00000013598 I 0.836
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.836
Msi2 Mus musculus ENSMUSG00000069769 I 0.836
AAI69841 Xenopus laevis AAI69841 I 0.829
MSI2 Canis familiaris ENSCAFG00000017418 I 0.829
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.829
AAA50004 Xenopus laevis AAA50004 I 0.829
msi2a Danio rerio ENSDARG00000033901 I 0.821
msi1 Danio rerio ENSDARG00000010710 I 0.807
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.800
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.793
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.786
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.771
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.764
GD12423 Drosophila simulans FBgn0184155 I 0.736
GK18043 Drosophila willistoni FBgn0220042 I 0.736
GE22169 Drosophila yakuba FBgn0239397 I 0.736
GM24349 Drosophila sechellia FBgn0179213 I 0.736
Rbp6 Drosophila melanogaster FBgn0260943 I 0.736
GH15068 Drosophila grimshawi FBgn0122543 I 0.736
GF24401 Drosophila ananassae FBgn0101395 I 0.736
GG15829 Drosophila erecta FBgn0108068 I 0.736
GI12835 Drosophila mojavensis FBgn0135592 I 0.736
ENSGACG00000008674 Gasterosteus aculeatus ENSGACG00000008674 I 0.732
ENSMGAG00000008742 Meleagris gallopavo ENSMGAG00000008742 I 0.707
MSI1 Ochotona princeps ENSOPRG00000016879 I 0.700
LOC100070744 Equus caballus ENSECAG00000011435 I 0.700
msi-1 Caenorhabditis elegans R10E9.1 I 0.700
MSI1 Loxodonta africana ENSLAFG00000009412 I 0.700