MSI1 (Pteropus vampyrus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPVAG00000002225 T40843_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.893
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.893
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000002104 RRM 1 57
ENSPVAP00000002104 RRM 77 145

Links

Other RRM family RBPs
Other Pteropus vampyrus RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MSI1 Felis catus ENSFCAG00000011007 I 0.984
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.977
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.977
MSI1 Echinops telfairi ENSETEG00000004756 I 0.976
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.969
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.969
LOC100053469 Equus caballus ENSECAG00000017526 I 0.945
Msi1 Mus musculus ENSMUSG00000054256 I 0.925
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.921
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.899
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.899
MSI1 Homo sapiens ENSG00000135097 D 0.893
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.893
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.893
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.893
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.886
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.886
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.874
MSI1 Canis familiaris ENSCAFG00000010283 I 0.873
AAH82667 Xenopus laevis AAH82667 I 0.857
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.857
CBU92439 Xenopus laevis CBU92439 I 0.857
AAA49920 Xenopus laevis AAA49920 I 0.857
CBF67566 Xenopus laevis CBF67566 I 0.857
AAH84959 Xenopus laevis AAH84959 I 0.850
AAA49919 Xenopus laevis AAA49919 I 0.850
msi1 Danio rerio ENSDARG00000010710 I 0.842
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.835
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.807
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.807
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.807
MSI1 Ochotona princeps ENSOPRG00000016879 I 0.802
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.797
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.793
MSI1 Loxodonta africana ENSLAFG00000009412 I 0.789
ENSMGAG00000008742 Meleagris gallopavo ENSMGAG00000008742 I 0.780
msi2b Danio rerio ENSDARG00000032614 I 0.764
LOC100070744 Equus caballus ENSECAG00000011435 I 0.764
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.757
AAI69841 Xenopus laevis AAI69841 I 0.757
MSI2 Microcebus murinus ENSMICG00000013598 I 0.757
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.757
Msi2 Mus musculus ENSMUSG00000069769 I 0.757
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.757
AAA50004 Xenopus laevis AAA50004 I 0.757
MSI2 Homo sapiens ENSG00000153944 I 0.757
MSI1 Macropus eugenii ENSMEUG00000015759 N 0.754
msi2a Danio rerio ENSDARG00000033901 I 0.750
MSI2 Macaca mulatta ENSMMUG00000002069 I 0.748
MSI2 Canis familiaris ENSCAFG00000017418 I 0.743
AGAP006656 Anopheles gambiae AGAP006656 N 0.740
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.714
nasonia_NCBI_hmm598804 Nasonia vitripennis nasonia_NCBI_hmm598804 N 0.707
MSI2 Cavia porcellus ENSCPOG00000008752 N 0.701