MSI1 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000012361 T35848_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		1.000
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000011123 RRM 2 71
ENSCPOP00000011123 RRM 91 160

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MSI1 Callithrix jacchus ENSCJAG00000008578 I 1.000
MSI1 Homo sapiens ENSG00000135097 D 1.000
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.993
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.993
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.993
Msi1 Mus musculus ENSMUSG00000054256 I 0.993
MSI1 Canis familiaris ENSCAFG00000010283 I 0.979
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.979
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.971
CBU92439 Xenopus laevis CBU92439 I 0.964
AAA49920 Xenopus laevis AAA49920 I 0.964
CBF67566 Xenopus laevis CBF67566 I 0.964
AAH82667 Xenopus laevis AAH82667 I 0.964
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.964
AAH84959 Xenopus laevis AAH84959 I 0.957
AAA49919 Xenopus laevis AAA49919 I 0.957
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.914
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.914
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.914
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.914
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.914
MSI1 Felis catus ENSFCAG00000011007 I 0.907
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.907
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.907
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.900
MSI1 Echinops telfairi ENSETEG00000004756 I 0.900
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.893
LOC100053469 Equus caballus ENSECAG00000017526 I 0.886
msi2b Danio rerio ENSDARG00000032614 I 0.850
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.850
MSI2 Homo sapiens ENSG00000153944 I 0.843
AAA50004 Xenopus laevis AAA50004 I 0.843
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.843
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.843
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.843
AAI69841 Xenopus laevis AAI69841 I 0.843
MSI2 Microcebus murinus ENSMICG00000013598 I 0.843
Msi2 Mus musculus ENSMUSG00000069769 I 0.843
MSI2 Canis familiaris ENSCAFG00000017418 I 0.836
msi2a Danio rerio ENSDARG00000033901 I 0.836
msi1 Danio rerio ENSDARG00000010710 I 0.821
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.814
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.807
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.786
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.779
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.771
GD12423 Drosophila simulans FBgn0184155 I 0.750
GH15068 Drosophila grimshawi FBgn0122543 I 0.750
GG15829 Drosophila erecta FBgn0108068 I 0.750
GF24401 Drosophila ananassae FBgn0101395 I 0.750
GI12835 Drosophila mojavensis FBgn0135592 I 0.750
GM24349 Drosophila sechellia FBgn0179213 I 0.750
Rbp6 Drosophila melanogaster FBgn0260943 I 0.750
GE22169 Drosophila yakuba FBgn0239397 I 0.750
GK18043 Drosophila willistoni FBgn0220042 I 0.750
ENSGACG00000008674 Gasterosteus aculeatus ENSGACG00000008674 I 0.746
MSI1 Loxodonta africana ENSLAFG00000009412 I 0.736
msi-1 Caenorhabditis elegans R10E9.1 I 0.729
CBN10423 Caenorhabditis brenneri CBN10423 I 0.721
MSI1 Ochotona princeps ENSOPRG00000016879 I 0.721
ENSMGAG00000008742 Meleagris gallopavo ENSMGAG00000008742 I 0.721
CBG03639 Caenorhabditis briggsae CBG03639 I 0.714
LOC100070744 Equus caballus ENSECAG00000011435 I 0.707
Minc01924 Meloidogyne incognita Minc01924 I 0.707